PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI06G00470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 227aa MW: 25694.5 Da PI: 9.7253 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87 | 1.1e-27 | 18 | 67 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie++++rqvtfskRr+g+lKKA+ELSvLCdaeva+++fs++g+++ ++s OMERI06G00470.1 18 RIEDTTRRQVTFSKRRKGLLKKASELSVLCDAEVALLVFSPRGRFFHFAS 67 8*********************************************9986 PP | |||||||
2 | K-box | 38.7 | 4.4e-14 | 91 | 155 | 9 | 73 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 e + ++++ +++ L ei++ + R+++Ge+Les+sl+eL+ Le q+eksl++iR +K + OMERI06G00470.1 91 PRELTVKNMKSQSETLGMEIDTVEAYTRKMQGENLESCSLQELHGLEMQMEKSLSSIRLQKASKW 155 5667789****************************************************998655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 26.815 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-32 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-24 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-27 | 12 | 89 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.50E-34 | 15 | 78 | No hit | No description |
Pfam | PF00319 | 1.1E-25 | 18 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-24 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-24 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.0E-15 | 96 | 191 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 10.488 | 96 | 201 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MAAAAAAGGQ QRRREMRRIE DTTRRQVTFS KRRKGLLKKA SELSVLCDAE VALLVFSPRG 60 RFFHFASAPS LEGTIDRYIS HTQEAPANKK PRELTVKNMK SQSETLGMEI DTVEAYTRKM 120 QGENLESCSL QELHGLEMQM EKSLSSIRLQ KASKWSQCAI YVVAVQKKLM DKISQLQQQK 180 ILSEENALLL DQGKVQHAPI GAPEREMNQN QHVQDIDVDT ELVIGRR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 11 | 33 | RRREMRRIEDTTRRQVTFSKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241055 | 0.0 | AK241055.1 Oryza sativa Japonica Group cDNA, clone: J065063N18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642540.1 | 1e-135 | MADS-box transcription factor 50-like isoform X1 | ||||
Refseq | XP_015642541.1 | 1e-135 | MADS-box transcription factor 50-like isoform X1 | ||||
TrEMBL | A0A0E0DVM1 | 1e-167 | A0A0E0DVM1_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI06G00490.1 | 1e-168 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17434 | 10 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 3e-37 | AGAMOUS-like 20 |