PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI05G19140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 197aa MW: 22134.1 Da PI: 5.7239 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 48.1 | 2.5e-15 | 12 | 40 | 27 | 55 |
G2-like 27 AtPktilelmkvkgLtlehvkSHLQkYRl 55 AtPk +l +m+v+g+t++hvkSHLQkYRl OMERI05G19140.1 12 ATPKGVLTVMGVPGITIYHVKSHLQKYRL 40 9***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.94E-6 | 10 | 40 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-14 | 11 | 41 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-10 | 12 | 41 | IPR006447 | Myb domain, plants |
Pfam | PF14379 | 1.4E-24 | 72 | 118 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MALQVDKVWT GATPKGVLTV MGVPGITIYH VKSHLQKYRL AKYIPESPAE GSKDEKKDSS 60 DSLSNTDSAP GMQINEALKM QMEVQKRLHE QLEVQRQLQL RIEAQGKYLQ MIIEEQQKLG 120 GSLKACEEQK LPRSPPSLDD YPDSMQPSPK KPKMDLSPDS VRDVTQSDFE SHLIGPWDQE 180 AAFRVDEFKA DPGLNKS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061987 | 0.0 | AK061987.1 Oryza sativa Japonica Group cDNA clone:001-043-B07, full insert sequence. | |||
GenBank | AK069306 | 0.0 | AK069306.1 Oryza sativa Japonica Group cDNA clone:J023012H08, full insert sequence. | |||
GenBank | CT830069 | 0.0 | CT830069.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051M08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639152.1 | 1e-131 | myb family transcription factor PHL7 | ||||
Refseq | XP_015639153.1 | 1e-131 | myb family transcription factor PHL7 | ||||
Refseq | XP_015639154.1 | 1e-131 | myb family transcription factor PHL7 | ||||
Refseq | XP_015639155.1 | 1e-131 | myb family transcription factor PHL7 | ||||
Swissprot | Q9SJW0 | 4e-55 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A0E0DTE0 | 1e-142 | A0A0E0DTE0_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI05G18250.1 | 1e-132 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7913 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 5e-36 | G2-like family protein |