PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI05G00560.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 399aa    MW: 44482.5 Da    PI: 8.3353
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI05G00560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.001387109323
                      ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                      C+  +Cgk+F +   L++H  +H
  OMERI05G00560.1  87 CSyeNCGKTFVDVAALRKHAHVH 109
                      77779**************9887 PP
2zf-C2H218.65.3e-06114138123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      y C+   Cgk F ++s LkrH   H
  OMERI05G00560.1 114 YICQepGCGKKFVDSSKLKRHHLIH 138
                      889999***************9988 PP
3zf-C2H218.94.1e-06144168123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + Cp   Cgk Fs   nL++H++tH
  OMERI05G00560.1 144 FICPhpGCGKAFSLDFNLRSHLKTH 168
                      789*********************9 PP
4zf-C2H216.62.3e-05174198123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++Cp   Cgk+F++ s Lk+H + H
  OMERI05G00560.1 174 HVCPfpACGKRFTSDSKLKSHVKGH 198
                      789999***************9988 PP
5zf-C2H218.46.1e-06259284123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      y+Cp   Cgk + +++ L+ H++t H
  OMERI05G00560.1 259 YVCPydGCGKAYIHSYKLNLHLKTqH 284
                      9**********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.0E-1280109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01685109IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.40685114IPR007087Zinc finger, C2H2
PROSITE patternPS00028087109IPR007087Zinc finger, C2H2
SuperFamilySSF576671.27E-788138No hitNo description
Gene3DG3DSA:3.30.160.606.8E-13111134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0012114138IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.066114143IPR007087Zinc finger, C2H2
PROSITE patternPS000280116138IPR007087Zinc finger, C2H2
SuperFamilySSF576671.43E-12125178No hitNo description
Gene3DG3DSA:3.30.160.603.2E-18135169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0011144168IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.822144173IPR007087Zinc finger, C2H2
PROSITE patternPS000280146168IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-8172198IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.012174198IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.367174203IPR007087Zinc finger, C2H2
PROSITE patternPS000280176198IPR007087Zinc finger, C2H2
SuperFamilySSF576671.82E-7177198No hitNo description
SuperFamilySSF576671.82E-7254282No hitNo description
Gene3DG3DSA:3.30.160.604.5E-10255284IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0021259284IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.619259292IPR007087Zinc finger, C2H2
PROSITE patternPS000280261284IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MEYAAPAGAG GYYYYPPSQQ HKPRRPPRPA ARWVKHWIPQ DLATSSGKCA LYKWVREDVY  60
KNLKDGKAVP EPEAVKPEPT TEILFLCSYE NCGKTFVDVA ALRKHAHVHN ERQYICQEPG  120
CGKKFVDSSK LKRHHLIHTG QKDFICPHPG CGKAFSLDFN LRSHLKTHAL ENYHVCPFPA  180
CGKRFTSDSK LKSHVKGHEK TGTPITAQYV PSSDKPQSSS KPATPATTKP TTPAATKTTT  240
PASTKPTTPA PTSFAERPYV CPYDGCGKAY IHSYKLNLHL KTQHPEHGQE ENGRIAAHAS  300
EHAVNDRANQ YNYAEIVDLA PNPKRSKTNS GHKTPSSNKA YNVKISSVLP ADISGVKNQW  360
PGKYEDDSEE TEEDQGNNIE DGWRYGNQNA DDEETEYED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C9e-35872008119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1034440.0AK103444.1 Oryza sativa Japonica Group cDNA clone:J033129E14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637702.10.0zinc finger transcription factor YY1
TrEMBLA0A0E0DKW20.0A0A0E0DKW2_9ORYZ; Uncharacterized protein
STRINGOMERI05G00500.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.13e-91C2H2 family protein