PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI04G23230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | AP2 | ||||||||
Protein Properties | Length: 482aa MW: 52151.7 Da PI: 6.0849 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.8 | 9.6e-12 | 136 | 192 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g OMERI04G23230.1 136 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 192 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 52.3 | 1.4e-16 | 235 | 286 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+fgt+eeAa+a++ a+ k++g OMERI04G23230.1 235 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTEEEAAEAYDIAAIKFRG 286 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.4E-9 | 136 | 192 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.32E-18 | 136 | 202 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-15 | 136 | 201 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.57 | 137 | 200 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-12 | 137 | 201 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-22 | 137 | 206 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.5E-6 | 138 | 149 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-11 | 235 | 286 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.99E-24 | 235 | 295 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-18 | 235 | 295 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-17 | 236 | 294 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-32 | 236 | 300 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.137 | 236 | 294 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.5E-6 | 276 | 296 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0040019 | Biological Process | positive regulation of embryonic development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MDMDTSHHYP WLNFSLAHHC EMEEEERGAA AELAAIAGAA PPPKLEDFLG GGCNRGSGGA 60 ACPVQTTAAE LYESELKFLA AGFQLSGAAA PVPALLPAAG LEQTDETKQL ALPPQAAVAP 120 APEQKKAVDS FGQRTSIYRG VTRHRWTGRY EAHLWDNSCR REGQSRKGRQ GGYDKEEKAA 180 RAYDLAALKY WGPSTTTNFP VAEYEKELEE MKHMTRQEFV ASLRRKSSGF SRGASIYRGV 240 TRHHQHGRWQ ARIGRVAGNK DLYLGTFGTE EEAAEAYDIA AIKFRGLNAV TNFEIGRYNV 300 ESIISSNLPI GSMAGNRSTK AGLELAPSSS ADAIAAAAEA NHTGVAPPST LAFTALPMKY 360 DQADYLSYLA LQHHQQGNLQ GLGFGLYSSG VNLDFANANG NGAMSHCYTN VSLHEQQQQH 420 QQEQQQDQQD DQSQSSNNSC GSIPFATPIA FSGSYESSMT AAGSFGYYPN VAAFQTPIFG 480 ME |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY062179 | 0.0 | AY062179.1 Oryza sativa aintegumenta-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633701.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 isoform X2 | ||||
Swissprot | Q6PQQ3 | 1e-132 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A0E0DJB2 | 0.0 | A0A0E0DJB2_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI04G22780.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-117 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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