PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI04G09520.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 343aa    MW: 37771.1 Da    PI: 11.0576
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI04G09520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.61.9e-141161250
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-..TTSEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs..stgklyeys 50
                     rie+  +r + f kR++g+ KKAeEL  LCda v  +++s   +g+l+ ++
  OMERI04G09520.1 11 RIEDRVRRGICFRKRLAGLEKKAEELAMLCDAHVGFVVLScsGDGRLHHFA 61
                     8*********************************88777511678898886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-12263IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.194253IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-10424IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-14464IPR002100Transcription factor, MADS-box
PfamPF003191.1E-171160IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-102439IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-103960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGRRGRVVLR RIEDRVRRGI CFRKRLAGLE KKAEELAMLC DAHVGFVVLS CSGDGRLHHF  60
AAPAKSSISH PSRLPSSLFP ATRGCHRFNH RLTAGVLRQR GLFHHRPPGC SWATGLEYVG  120
LGGDRHSRTT FLGGAPPSGG AAPSSVGTRE LQRIRSIENI VERYENSLTA QKGVHGRRIL  180
EKTKGKDFHV PKETTDKGPG KDFHVPKETT DKGSNDDDMR SIDETDISTL NMDQLSQIER  240
LLEDELRWTR ERKVVVDRSA RLQKKVRGRA AIVEVEGGSM EIPKYLGRRR RGGGGGGGGA  300
TAPDYAVGPQ HAVLGRRSSA VNRRDKKVIG EKLEILRAPP AAV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117961e-156AK111796.1 Oryza sativa Japonica Group cDNA clone:J023103N18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637115.11e-42truncated transcription factor CAULIFLOWER D-like isoform X1
TrEMBLA0A0E0DDE60.0A0A0E0DDE6_9ORYZ; Uncharacterized protein
STRINGOMERI04G08460.11e-117(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1509655
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.12e-13AGAMOUS-like 21