PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI03G28110.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 204aa MW: 21874.4 Da PI: 7.4593

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI03G28110.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	35.6	1.8e-11	108	142	20	54
S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES CS WRKY 20 fprsYYrCtsagCpvkkkversaedpkvveitYeg 54 +sYY+Ct+ C v k+ver+++d+++v++tY g OMERI03G28110.1 108 WRKSYYKCTTVVCLVWKHVERASHDTRAVITTYAG 142 568******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118290	1.96E-11	97	142	IPR003657	WRKY domain
SMART	SM00774	1.5E-7	102	145	IPR003657	WRKY domain
PROSITE profile	PS50811	14.745	105	142	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.0E-9	107	142	IPR003657	WRKY domain
Pfam	PF03106	5.0E-5	109	142	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MPLWAGSLST RRNTSSGCAA AAACADQYSA ATPDNSSVTF GDDKADNESH RSEVDEPEAK 60 GWKEDADNEG SSGGMGGGAG GKPVRKPRLV VHMLSDIDIN ILDDGFPWRK SYYKCTTVVC 120 LVWKHVERAS HDTRAVITTY AGAGAVVQRD PAVGRLRPAG ALHPRDAPQP RLPLRNYGGY 180 GAGAAFQRTK DKPRDDLFVE SLLC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250\|UniProtKB:Q6IEQ7, ECO:0000250\|UniProtKB:Q6QHD1}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250\|UniProtKB:Q6IEQ7, ECO:0000269\|PubMed:16919842, ECO:0000269\|PubMed:25110688}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012617	9e-95	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006655211.1	5e-58	PREDICTED: probable WRKY transcription factor 26
Swissprot	Q6B6R4	1e-29	WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBL	A0A0E0D5H4	1e-149	A0A0E0D5H4_9ORYZ; Uncharacterized protein
STRING	OMERI03G27240.1	1e-102	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2300	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	2e-24	WRKY DNA-binding protein 33

Publications ? help Back to Top
Basu S,Roychoudhury A Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance. Biomed Res Int, 2014. 2014: p. 706890 [PMID:25110688]