PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G23760.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 782aa    MW: 87482.6 Da    PI: 6.7069
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G23760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.35.8e-18421221499
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        +++p +f ++++g    s ++ l+ +sgr+W++ +   +++ +  vl++GWkeFv+ang++e+D ++F+++g s+f  +v +f+ 
  OMERI03G23760.1  42 ESMIVPTRFSNNFNGH--ISEEVNLKPPSGRTWSIGV--ANSDTGeLVLRSGWKEFVDANGVQENDCLLFRYSGVSSF--YVLIFDP 122
                      35899****9777655..6779***************..5555555***************************99999..9999986 PP
2B3375.8e-122833521584
                      -EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
               B3  15 rlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                       + ++ +fa ++ g+    +++++e   g   +W v++  r +s++ + ++GW++F+++ngL + D+++F+l
  OMERI03G23760.1 283 TVGVSPEFAGRYLGPA-VAREVVMERGGGggDQWHVRFVRRESSRG-FHGTGWRRFARDNGLLAHDVCLFEL 352
                      5567788888884443.44589999866666*******65555555.6788*******************96 PP
3B3567.4e-184485241798
                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      ++p +fa++++g    s ++ l+++sg++W++ +   +++ +  vl++GWkeFv+ ng++egD ++F+++g s+f   v +f+
  OMERI03G23760.1 448 TVPARFANNFNGH--ISEEVNLRSPSGKTWSIGV--ANSDAGeLVLQSGWKEFVDGNGIEEGDCLLFRYSGVSSF--EVLIFD 524
                      6899***888666..6779***************..5555445***************************99999..888887 PP
4B339.21.2e-12671751585
                      -..-HHHHT..T-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   5 ltpsdvlks..grlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        +s+v +s  +++ ++ +fa ++ g ++ +  +++le  ++g +W v + +r++ ++++ ++GW++F+ +n+L + D+++F+l+
  OMERI03G23760.1 671 IHSSHVRSSkyCIVGVSPEFAGKYlGAVE-R--EVVLEReSRGGEWHVLFVHRRNTRGFY-GGGWRQFAGDNRLVAHDVCLFELM 751
                      4445554445599999********76563.3..6999996788*******9999999987.67********************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.35E-2228128IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-2129125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.0329123IPR003340B3 DNA binding domain
SMARTSM010192.0E-932123IPR003340B3 DNA binding domain
CDDcd100173.48E-1740121No hitNo description
PfamPF023622.2E-1542121IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-14261378IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.9E-13261353IPR015300DNA-binding pseudobarrel domain
CDDcd100173.78E-12265352No hitNo description
SMARTSM010190.0023267372IPR003340B3 DNA binding domain
PROSITE profilePS5086311.025269380IPR003340B3 DNA binding domain
PfamPF023627.9E-10283352IPR003340B3 DNA binding domain
SMARTSM010194.1E-6443526IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-21448528IPR015300DNA-binding pseudobarrel domain
PfamPF023629.1E-15448524IPR003340B3 DNA binding domain
CDDcd100172.15E-16448524No hitNo description
SuperFamilySSF1019363.73E-20448531IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.692449526IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.7E-17661772IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-17661772IPR015300DNA-binding pseudobarrel domain
CDDcd100173.25E-13665772No hitNo description
PROSITE profilePS5086310.912667774IPR003340B3 DNA binding domain
SMARTSM010194.9E-4667774IPR003340B3 DNA binding domain
PfamPF023622.1E-10679752IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MGMLKIGKSC SVCKEWQEHC YWSHMADDCK HFLTYMVGDF TESMIVPTRF SNNFNGHISE  60
EVNLKPPSGR TWSIGVANSD TGELVLRSGW KEFVDANGVQ ENDCLLFRYS GVSSFYVLIF  120
DPSGCEKASP HFVENHGFGR EEKSAGAEEG GRDGDKNGHH QHQLEMTPHK NSSRCRSIPR  180
AYSASLTCIR PLILVHTCMN VLAEQDHREE KKEVDHEDED EDEDEDGEDR YYFCRHGGRV  240
TEYNLSDGDK EEISRVPVPV EPGNPVLVKV IHASHLLSSR YSTVGVSPEF AGRYLGPAVA  300
REVVMERGGG GGDQWHVRFV RRESSRGFHG TGWRRFARDN GLLAHDVCLF ELRLVGGAGA  360
GDRLRRRPRP TMKVHVLRRR PPAKAEEDGE AEWRDNLRGG EVRLRRVAKL DGVGVQLAMD  420
TLAWPARTAV FARSGKNTAT GAIWPITTVP ARFANNFNGH ISEEVNLRSP SGKTWSIGVA  480
NSDAGELVLQ SGWKEFVDGN GIEEGDCLLF RYSGVSSFEV LIFDPSGCEK ASPHFVGSHG  540
FGGAENSAGA ERGGGNGRRT PPIVDGDNGH RHHLEMTLHR NSGRSIPRAC KRSLFSDETE  600
RGGREAKENE DEDEEEEEDV VAATEGGRYG EYYFSRHGRV AEYNLREEDR EEISRVPVPV  660
EPGNPVFVQV IHSSHVRSSK YCIVGVSPEF AGKYLGAVER EVVLERESRG GEWHVLFVHR  720
RNTRGFYGGG WRQFAGDNRL VAHDVCLFEL MMVDAAAGRN RRRPTMTVHV LRRVRGRFVL  780
LR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1361366DRLRRR
2362368RLRRRPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0635060.0AK063506.1 Oryza sativa Japonica Group cDNA clone:001-116-F06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630283.10.0B3 domain-containing protein Os03g0622100
SwissprotQ10GM40.0Y3221_ORYSJ; B3 domain-containing protein Os03g0622100
TrEMBLA0A0E0D3S40.0A0A0E0D3S4_9ORYZ; Uncharacterized protein
STRINGOMERI03G23160.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-25B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]