PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G23750.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 303aa    MW: 34692.9 Da    PI: 9.8333
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G23750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.26.7e-23371181299
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       + r+++p++f+ ++ggk   +k ++le++sg +++v++  +k+sgr+vl++GW ++v+a++Lk gDf+vFk++g+s+   +  +f++
  OMERI03G23750.1  37 FHERVTIPNEFLHNFGGK--IPKSIKLETRSGLTFDVQV--TKNSGRVVLQSGWASYVSAHDLKIGDFLVFKYSGDSQL--KTLIFDQ 118
                      3568********888888..6778***************..********************************998777..7777765 PP
2B345.71.1e-142223021699
                      EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
               B3  16 lvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                      + +++k+a+ +       e++t++l+  +g+sW+v+++ +k+ ++ +l+ GW++F+ +n+L  gD+++F+l ++ ++  + v+++r+
  OMERI03G23750.1 222 VEISRKYADVYlpF----EDRTVVLQ-HHGKSWNVRCCLTKQNSKRFLK-GWRQFAGDNKLHLGDICLFELLKDkKKYVMDVHIIRR 302
                      56777777666431....34466655.5*********996655554555.********************99887888888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-2324121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-2325121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.09826119IPR003340B3 DNA binding domain
CDDcd100173.12E-2127117No hitNo description
SMARTSM010194.4E-829119IPR003340B3 DNA binding domain
PfamPF023625.0E-2130117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-22198302IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-21199302IPR015300DNA-binding pseudobarrel domain
CDDcd100174.90E-17204301No hitNo description
PROSITE profilePS5086312.337207303IPR003340B3 DNA binding domain
SMARTSM010191.1E-4208303IPR003340B3 DNA binding domain
PfamPF023624.9E-13223302IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSKSGERCSK EGDDAYFDWN RTNGEDKHFF KVMLGDFHER VTIPNEFLHN FGGKIPKSIK  60
LETRSGLTFD VQVTKNSGRV VLQSGWASYV SAHDLKIGDF LVFKYSGDSQ LKTLIFDQSG  120
CEKVCEKPVN MSGSSYDIAM RNSQDEKKKR KQRAISRQGT VKPSEEVLKA ELVPGCILPS  180
RTDLTRLQKN ILTEKVKAIN SETPIYGYVM NNSSIHGIPC TVEISRKYAD VYLPFEDRTV  240
VLQHHGKSWN VRCCLTKQNS KRFLKGWRQF AGDNKLHLGD ICLFELLKDK KKYVMDVHII  300
RRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0972800.0AC097280.8 Oryza sativa chromosome 3 BAC OSJNBb0111B07 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629587.10.0putative B3 domain-containing protein Os03g0621600
SwissprotQ851V10.0Y3160_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0E0D3S30.0A0A0E0D3S3_9ORYZ; Uncharacterized protein
STRINGOMERI03G23150.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-23B3 family protein