PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMERI03G19290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 262aa MW: 27296.8 Da PI: 4.1433 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.7 | 7e-10 | 8 | 38 | 15 | 47 |
HHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 15 avkqlGggtWktIartmgkgRtlkqcksrwqky 47 + +G + W++Ia +++ gRt++++k++w++ OMERI03G19290.1 8 WHDAYGCR-WSLIAGRLP-GRTDNEIKNYWNST 38 67789999.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.343 | 1 | 43 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.06E-8 | 5 | 45 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.6E-8 | 5 | 38 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.44E-6 | 5 | 39 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-13 | 6 | 39 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 262 aa Download sequence Send to blast |
MASNLKTWHD AYGCRWSLIA GRLPGRTDNE IKNYWNSTLS KRIAMQRTAA ATSMPAEATT 60 SSADAAGAAA RRRRSPEPRT IAVSPIRTKA LRCNNNNNNN RVVAAAGACS HGGRPPESGA 120 PGEAAADNVA TPQAGQHQLQ ELAGGEDDDD LPVPAVCIDL DLDDIELGGL DGFLISPWRG 180 GGHDEDNAAA AGAVPNLPMP IGYELGGGGG GEAGAVDLEA LLGQLEAGED GDGDHQQQQQ 240 EVPSSLGDED DDDYLELAPW LL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC113433 | 0.0 | AC113433.8 Oryza sativa chromosome 3 BAC OSJNBb0108E08 genomic sequence, complete sequence. | |||
GenBank | AK110683 | 0.0 | AK110683.1 Oryza sativa Japonica Group cDNA clone:002-169-H06, full insert sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629423.1 | 2e-97 | anthocyanin regulatory C1 protein | ||||
TrEMBL | A0A0E0D213 | 0.0 | A0A0E0D213_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI03G19270.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP20001 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G35550.1 | 3e-13 | MYB family protein |