PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI03G17110.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GeBP

Protein Properties

Length: 383aa MW: 40572.1 Da PI: 5.0424

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI03G17110.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	111.7	4.7e-35	86	185	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 lfqrlw+eeDeiv+L+++ +f+a++g+ +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ +++g+++sf+++h+q ife+ OMERI03G17110.1 86 LFQRLWTEEDEIVILRAFAEFTAQRGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVDRlRATGQSFSFRSPHEQAIFEI 179 79***********************9977778***********************************999************** PP DUF573 92 skkiWg 97 ++ iW+ OMERI03G17110.1 180 ARGIWR 185 ***7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.7E-30	87	184	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MLPTGGYPSA AAISFPDADV DDDSDDGDFT DAPLIDPSDP TFPNPASSSA AAAAMATPAA 60 AGGGSGSVGG VGSSSGGGGG GERRPLFQRL WTEEDEIVIL RAFAEFTAQR GTAFASHQYD 120 TDPFYEDMRR RLQLDFSKSQ LVEKLRRLKR KYRNCVDRLR ATGQSFSFRS PHEQAIFEIA 180 RGIWRPTSDK HGRDADSDDD ALPDAAAAVP VPAPANGEVR SPSSTRAQQR RGRRRRTADA 240 AAATATAADA SEPPQPYPPA PAPAPVKAED ALPHFFPQGA VAVTATTHGH GVDPASAAAA 300 AAAANAEGGI LAPLFKEMVR AMLTAGMAPP SLEPPAPGIP MEGERWRQQR ILELEVYLRR 360 IDLLQDQVRT ALEELKSTPP ATQ

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MLPTGGYPSA AAISFPDADV DDDSDDGDFT DAPLIDPSDP TFPNPASSSA AAAAMATPAA  60
AGGGSGSVGG VGSSSGGGGG GERRPLFQRL WTEEDEIVIL RAFAEFTAQR GTAFASHQYD  120
TDPFYEDMRR RLQLDFSKSQ LVEKLRRLKR KYRNCVDRLR ATGQSFSFRS PHEQAIFEIA  180
RGIWRPTSDK HGRDADSDDD ALPDAAAAVP VPAPANGEVR SPSSTRAQQR RGRRRRTADA  240
AAATATAADA SEPPQPYPPA PAPAPVKAED ALPHFFPQGA VAVTATTHGH GVDPASAAAA  300
AAAANAEGGI LAPLFKEMVR AMLTAGMAPP SLEPPAPGIP MEGERWRQQR ILELEVYLRR  360
IDLLQDQVRT ALEELKSTPP ATQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC082644	0.0	AC082644.10 Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence.
GenBank	AK243208	0.0	AK243208.1 Oryza sativa Japonica Group cDNA, clone: J100042A05, full insert sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CT837748	0.0	CT837748.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129A20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015632846.1	1e-151	probable transcription factor At3g04930
TrEMBL	A0A0E0D166	0.0	A0A0E0D166_9ORYZ; Uncharacterized protein
STRING	OMERI03G17190.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP974	37	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	2e-33	DNA-binding storekeeper protein-related transcriptional regulator