PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI03G07870.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 538aa    MW: 60331.5 Da    PI: 8.4031
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI03G07870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.89.7e-192933791199
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +++  l lp kfa+e g  + ++  l++  e  r W+vk+  +  sg ++l++GW+eF++a++L++g f+vF++dg   f  +v+vf++
  OMERI03G07870.1 293 SSKTKLKLPYKFARELGDRELREARLRVAGEGRRPWDVKVFDDDVSGDVYLGRGWQEFARAHDLRDGHFLVFRYDGAAAF--TVTVFDE 379
                      455669**********999999999***************77999999**************************998888..9999986 PP
2B346.66.2e-154395111487
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      + l +p +f e+h++ k+e  +++l   +g+ W+v+l++  r +++r+ ++ GW +F+ +ngL  gD++ F++ ++
  OMERI03G07870.1 439 QYLNVPMEFQEAHEYAKRE--KVVL-RMRGEAWTVRLKHsrRERGQRTAFRYGWHRFCVDNGLAIGDTCFFRVLRE 511
                      56889********999776..4554.4599*******9876667777************************96654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF520582.47E-4016220IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.0E-122794IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM003644404362No hitNo description
SMARTSM00369144566IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514507.9584566IPR001611Leucine-rich repeat
PROSITE profilePS514505.2636889IPR001611Leucine-rich repeat
SMARTSM0036418089108No hitNo description
SMARTSM00369189111IPR003591Leucine-rich repeat, typical subtype
PfamPF138554.5E-790148IPR001611Leucine-rich repeat
PROSITE profilePS514507.16591112IPR001611Leucine-rich repeat
Gene3DG3DSA:3.80.10.101.1E-3395222IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM0036420112131No hitNo description
SMARTSM003699.9112134IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514506.349114135IPR001611Leucine-rich repeat
SMARTSM00364130135154No hitNo description
SMARTSM0036924135158IPR003591Leucine-rich repeat, typical subtype
SMARTSM0036452158177No hitNo description
PROSITE profilePS514506.249160181IPR001611Leucine-rich repeat
SMARTSM00364230181200No hitNo description
SMARTSM003690.016181204IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514506.534183204IPR001611Leucine-rich repeat
Gene3DG3DSA:2.40.330.101.3E-20280382IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-19282386IPR015300DNA-binding pseudobarrel domain
CDDcd100172.00E-20283378No hitNo description
PROSITE profilePS5086314.156283380IPR003340B3 DNA binding domain
SMARTSM010194.8E-16285380IPR003340B3 DNA binding domain
PfamPF023621.9E-15293379IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.8E-24422533IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-15423514IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.3E-5424533IPR003340B3 DNA binding domain
PROSITE profilePS5086312.308426533IPR003340B3 DNA binding domain
PfamPF023628.2E-13440511IPR003340B3 DNA binding domain
CDDcd100171.18E-10441507No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MGCCSSRSAD SPASRVTRWR STGIVALRDA RLKVVPNEVL QVGNSLRILD LTNNKIAEIP  60
QEVGTLVNMQ RLVLAGNLVE SIPANIGYLR NLKILTLDRN KISVLPEELG SLSNLQQLSI  120
SQNSLSRLPK SVGDLRNMLL LNVSVNKLIA LPESIGGCSS LEELQANGNS IEDVPSSICN  180
LVCLKSLSLN GNKIRQLPQN LLKDCKALQN ISLHDNPISM DQFQQMDGFT EFEARRRKKF  240
DKQIDSNVMM SSTALDEGID LNYQKTNSQI MEDQMANIRS TDFEFFRIIL PGSSKTKLKL  300
PYKFARELGD RELREARLRV AGEGRRPWDV KVFDDDVSGD VYLGRGWQEF ARAHDLRDGH  360
FLVFRYDGAA AFTVTVFDET MCRRDYRRRH HDAADSGSSS SDSSDAAAAT AAAEGVGDVA  420
LSQFAVTLRQ CNLEDKQAQY LNVPMEFQEA HEYAKREKVV LRMRGEAWTV RLKHSRRERG  480
QRTAFRYGWH RFCVDNGLAI GDTCFFRVLR EGDLRRGGGA DDHVLKVAVR KADGTTLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4u06_A3e-271322916283LIC10831
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8345210.0CT834521.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN128K08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0CX330.0A0A0E0CX33_9ORYZ; Uncharacterized protein
STRINGOGLUM03G08230.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1123044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.11e-16B3 family protein