PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI02G27830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 62aa MW: 7180.17 Da PI: 9.024 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26 | 1.7e-08 | 3 | 20 | 8 | 26 |
GGGGTS--TTTTT-SS-SS CS zf-CCCH 8 ffartGtCkyGdrCkFaHg 26 +f++ G Ck+Gd C FaHg OMERI02G27830.1 3 DFRK-GGCKRGDACEFAHG 20 5777.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 9.995 | 1 | 22 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-6 | 3 | 20 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-5 | 3 | 22 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 62 aa Download sequence Send to blast |
MQDFRKGGCK RGDACEFAHG VFECWLHPAR YRTQPYKDGT ACRRRVSFFA HTPDQLHVLP 60 PS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC132486 | 5e-75 | AC132486.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0473H02, complete sequence. | |||
GenBank | AK106392 | 5e-75 | AK106392.1 Oryza sativa Japonica Group cDNA clone:002-102-F01, full insert sequence. | |||
GenBank | AP014961 | 5e-75 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 5e-75 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971733.1 | 2e-34 | LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 2-like | ||||
Refseq | XP_015640763.1 | 9e-34 | zinc finger CCCH domain-containing protein 35 | ||||
Swissprot | Q6L4N4 | 8e-35 | C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35 | ||||
TrEMBL | A0A0E0CQ43 | 2e-39 | A0A0E0CQ43_9ORYZ; Uncharacterized protein | ||||
STRING | ORGLA05G0055500.1 | 3e-33 | (Oryza glaberrima) | ||||
STRING | Si004757m | 5e-34 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1578 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25900.2 | 4e-31 | C3H family protein |
Publications ? help Back to Top | |||
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