PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI02G19620.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 409aa MW: 46625.8 Da PI: 6.8026

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI02G19620.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64.1	3.1e-20	95	193	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcp 80 +W+ +v++L+ a+ +++e++ + ++k++W+ vs +m ergf +sp+qC++k+++lnkryk+++e+ +++t ++++++ OMERI02G19620.1 95 KWSSGMVKLLVSAVAYIDEDVDMDYgtgsaarrkhamlKRKGKWRLVSTAMTERGFPVSPQQCEDKFNDLNKRYKRMTEILGRGTaCQVVEHPE 188 7************8888887542334467778888899*****************************************95488887777 PP trihelix 81 yfdql 85 +++ + OMERI02G19620.1 189 LLEGM 193 76655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.7E-20	93	219	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MEGNLPPRGA LVHGHGHGGG VGAFDLEASM QQPPPFHFAQ DPHLHHHHGM VPVRGNPMLD 60 LGNVVKTSPS DEEDVDDGHH HGGGGKEAAQ WHRVKWSSGM VKLLVSAVAY IDEDVDMDYG 120 TGSAARRKHA MLKRKGKWRL VSTAMTERGF PVSPQQCEDK FNDLNKRYKR MTEILGRGTA 180 CQVVEHPELL EGMRLSGKLK EEARKHLNSK HLHYEEMCSY HNKNKMCLLD DPALQKSLRL 240 ALRSGEEHAK KNPFGYDDED FSDEDDEDEE FDDLEVSAED HHHGIHGAKR LKHDQEETHF 300 GSNLSEVAVI DMNKMLSEGS GGPTAEKSPS TPGMRDIRLE KRRLKIKAQM LKIEQKHFKW 360 LRFSKEKDRE LEKMRLENEK MKLENERLEL ELKLKEIEMG IKPKKIFSD

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MEGNLPPRGA LVHGHGHGGG VGAFDLEASM QQPPPFHFAQ DPHLHHHHGM VPVRGNPMLD  60
LGNVVKTSPS DEEDVDDGHH HGGGGKEAAQ WHRVKWSSGM VKLLVSAVAY IDEDVDMDYG  120
TGSAARRKHA MLKRKGKWRL VSTAMTERGF PVSPQQCEDK FNDLNKRYKR MTEILGRGTA  180
CQVVEHPELL EGMRLSGKLK EEARKHLNSK HLHYEEMCSY HNKNKMCLLD DPALQKSLRL  240
ALRSGEEHAK KNPFGYDDED FSDEDDEDEE FDDLEVSAED HHHGIHGAKR LKHDQEETHF  300
GSNLSEVAVI DMNKMLSEGS GGPTAEKSPS TPGMRDIRLE KRRLKIKAQM LKIEQKHFKW  360
LRFSKEKDRE LEKMRLENEK MKLENERLEL ELKLKEIEMG IKPKKIFSD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004877	0.0	AP004877.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0472F10.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	0.0	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627648.1	0.0	uncharacterized protein LOC4329598
TrEMBL	A0A0E0CLP9	0.0	A0A0E0CLP9_9ORYZ; Uncharacterized protein
STRING	OMERI02G18840.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12774	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	6e-64	sequence-specific DNA binding transcription factors