PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G11850.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 407aa    MW: 41631.2 Da    PI: 7.8131
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G11850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-13131181255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++h  +Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  OMERI02G11850.1 131 KMSHITVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 181
                      789*************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.80E-14127185No hitNo description
PROSITE profilePS5088815.237129180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-17129204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-10131181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-13131192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-11135186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MADGGGGLCE LFSDDHRDIR HVADADLFRI LETWEECING GAGVGGGGVS LVGVADQGAA  60
AASSGAGGGA RTTTTTAANA RRREGRDEEK GGGGGGGGGP PAQKKQKGSS SSSSSPAALA  120
AAVGDGDGAA KMSHITVERN RRKQMNEHLA VLRSLMPCFY VKRGDQASII GGVVDYIKEL  180
QQVLRSLEAK KNRKAYADQV LSPRPSPAAA LLMVKPTPPI SPRFAAAGVP ISPRTPTPGS  240
PYSKHVAAAA RPPHPAAATS SCSAAYSMSP AMTPTSSSST TTATTHELSP APFLPILDSL  300
VTELAARGGG ASCRPLVIPS SAAGIVGVPD VRVEFAGPNL VLKTVSQRAP GQALKIIAAL  360
ESLSLEILHV SICTVDDATV LSFTIKIGIE CELSAEELVQ EIQQTFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624375.20.0transcription factor SPEECHLESS
TrEMBLA0A0E0CIP00.0A0A0E0CIP0_9ORYZ; Uncharacterized protein
STRINGOMERI02G11680.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.15e-42bHLH family protein