PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G27420.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 255aa    MW: 27917.3 Da    PI: 6.9031
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G27420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.51.2e-32176234159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+
  OMERI01G27420.1 176 LDDGYRWRKYGQKAVKNSKHPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP 234
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-33162234IPR003657WRKY domain
SuperFamilySSF1182909.15E-29168235IPR003657WRKY domain
PROSITE profilePS5081128.885171236IPR003657WRKY domain
SMARTSM007741.1E-38176235IPR003657WRKY domain
PfamPF031064.4E-26177234IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MENLQLQGDD HDDEALAATT LPHFPYFAVP PLAVAPAASA TTSDGHQHGP LEVLEQPPCS  60
NNLHPDGLVD GPQLPTTAVP MMLPAMTSLD WQSLLQTCLQ VPPPVLEQQQ PAAAAQADQY  120
SGENDHGDLQ AAESSGAGNK EKQVMAKGGA GRSSGTKKKA SRPRFAFQTR SDNDILDDGY  180
RWRKYGQKAV KNSKHPRSYY RCTHHTCNVK KQVQRLAKDT SIVVTTYEGV HNHPCEKLME  240
ALTPILKQLQ FLSQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-24166233774Probable WRKY transcription factor 4
2lex_A3e-24166233774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00539DAPTransfer from AT5G41570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1089090.0AK108909.1 Oryza sativa Japonica Group cDNA clone:002-152-G06, full insert sequence.
GenBankAY3418450.0AY341845.1 Oryza sativa (japonica cultivar-group) WRKY4 mRNA, complete cds.
GenBankAY8706070.0AY870607.1 Oryza sativa (japonica cultivar-group) WRKY23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876574.11e-161probable WRKY transcription factor 24
TrEMBLA0A0E0C7I50.0A0A0E0C7I5_9ORYZ; Uncharacterized protein
STRINGOMERI01G26790.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.11e-57WRKY DNA-binding protein 24