PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G07930.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 109aa    MW: 11586.2 Da    PI: 9.8622
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G07930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.41.1e-1838107269
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvk 69 
                      fY++YA ++GF+vr sks  s+ ++ i++r+fvC+++g ++++++   ++k+rr+ra+ r  C a+l+v 
  OGLUM11G07930.1  38 FYCTYAARAGFRVRSSKSFASRIDDAIIMRRFVCTRQGLPSRKDTLldASKKRRNRASARAACPAMLQVA 107
                      9**************************************999988787999****************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-1638107IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MPLGAAGDED AAAVTGPSSA GEPAAGMEFA SPEEARAFYC TYAARAGFRV RSSKSFASRI  60
DDAIIMRRFV CTRQGLPSRK DTLLDASKKR RNRASARAAC PAMLQVADL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1354591e-177AC135459.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0004P24, complete sequence.
GenBankAC1380001e-177AC138000.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0024M06, complete sequence.
GenBankAP0149671e-177AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615544.15e-65protein FAR1-RELATED SEQUENCE 9
RefseqXP_025877014.15e-65protein FAR1-RELATED SEQUENCE 9
TrEMBLA0A0E0BH866e-71A0A0E0BH86_9ORYZ; Uncharacterized protein
STRINGOGLUM11G07930.11e-71(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2538033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.14e-17FAR1-related sequence 7