PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM11G07930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | FAR1 | ||||||||
Protein Properties | Length: 109aa MW: 11586.2 Da PI: 9.8622 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 59.4 | 1.1e-18 | 38 | 107 | 2 | 69 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvk 69 fY++YA ++GF+vr sks s+ ++ i++r+fvC+++g ++++++ ++k+rr+ra+ r C a+l+v OGLUM11G07930.1 38 FYCTYAARAGFRVRSSKSFASRIDDAIIMRRFVCTRQGLPSRKDTLldASKKRRNRASARAACPAMLQVA 107 9**************************************999988787999****************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-16 | 38 | 107 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MPLGAAGDED AAAVTGPSSA GEPAAGMEFA SPEEARAFYC TYAARAGFRV RSSKSFASRI 60 DDAIIMRRFV CTRQGLPSRK DTLLDASKKR RNRASARAAC PAMLQVADL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC135459 | 1e-177 | AC135459.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0004P24, complete sequence. | |||
GenBank | AC138000 | 1e-177 | AC138000.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0024M06, complete sequence. | |||
GenBank | AP014967 | 1e-177 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615544.1 | 5e-65 | protein FAR1-RELATED SEQUENCE 9 | ||||
Refseq | XP_025877014.1 | 5e-65 | protein FAR1-RELATED SEQUENCE 9 | ||||
TrEMBL | A0A0E0BH86 | 6e-71 | A0A0E0BH86_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM11G07930.1 | 1e-71 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25380 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 4e-17 | FAR1-related sequence 7 |