PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM09G20110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Trihelix | ||||||||
Protein Properties | Length: 339aa MW: 36509.1 Da PI: 6.9497 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 37.4 | 6.8e-12 | 25 | 130 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.................rergferspkqCkekwenlnkrykkikegekkr...tse 74 +W+++ + L+ea++ ++ +r+klk +W +++ + ++p+qCk+k+e+++kry+++ + + + +++ OGLUM09G20110.1 25 EWSESGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAHEVsahcamenaaaaaatgkPGSSTAKTPNQCKNKIESMKKRYRAESAAAARAgpaAAG 118 5*******************************9999999999**********9977778899******************99888776332466 PP trihelix 75 ssstcpyfdqle 86 + ++++f +++ OGLUM09G20110.1 119 AGPSWRFFARMD 130 678999999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.1E-13 | 23 | 131 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MDALPDAADA APLAAAAAPP QKRDEWSESG IVRLLEAYEA KWLLRNRAKL KWSDWVDIAH 60 EVSAHCAMEN AAAAAATGKP GSSTAKTPNQ CKNKIESMKK RYRAESAAAA RAGPAAAGAG 120 PSWRFFARMD GLLKGPAGSG QPQAELSNSI DLRAPPPAKV EVDVDADFVS QLADAGPGAL 180 SELVSAYANG SIQEKLDKVE NSGQVEGRAA ESDVNVSSPR IKEANEDAEE VDKVWDMSKK 240 RKNTEFDIAK SIELLASSFL KIERARMDLY RETERMRVEA EIKKGEMELK RTEIMAKTHL 300 QIAKLFAKRL KECSSKTGGS SSVTAEVDNH AKKGENGSG |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612002.1 | 0.0 | trihelix transcription factor ASIL1 | ||||
TrEMBL | A0A0E0B6I2 | 0.0 | A0A0E0B6I2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1QR81 | 0.0 | I1QR81_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM09G20110.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | ORGLA09G0156000.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7333 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54390.1 | 1e-47 | sequence-specific DNA binding transcription factors |