PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM09G18650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 194aa MW: 20894.6 Da PI: 10.8857 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 58.6 | 1.3e-18 | 124 | 177 | 4 | 57 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 ++r rr++kNRe+A rsR+RK+a++ +Le++v++L++eNk+L+ + e+l+k+v+ OGLUM09G18650.1 124 DRRKRRMIKNRESAARSRARKQARVNNLETEVEQLKQENKMLRVKYEQLRKTVE 177 789************************************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.5E-13 | 121 | 188 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.1E-17 | 123 | 177 | No hit | No description |
PROSITE profile | PS50217 | 12.093 | 123 | 177 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.5E-16 | 124 | 177 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.38E-13 | 125 | 176 | No hit | No description |
CDD | cd14707 | 1.08E-19 | 125 | 175 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 128 | 143 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 194 aa Download sequence Send to blast |
MAMEDDEDMW ANTSSPSASP PRPRGFISTA LSLNSTHLQG LLPSSFVDAA ASPCHASGNS 60 NGGGDGRNAA PMSSIFSASA SYHQQQHHLP APAPLDGAIL PARRFGLDMC AAAAAPAGVP 120 AAGDRRKRRM IKNRESAARS RARKQARVNN LETEVEQLKQ ENKMLRVKYE QLRKTVEGPV 180 PVRRTLQRVL SAPF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CT835908 | 0.0 | CT835908.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN083I14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611345.1 | 1e-106 | uncharacterized protein LOC9271661 | ||||
TrEMBL | A0A0E0B5W9 | 1e-139 | A0A0E0B5W9_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM09G18650.1 | 1e-140 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9764 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G17770.2 | 7e-09 | basic region/leucine zipper motif 27 |