PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G17250.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 276aa    MW: 28927.7 Da    PI: 6.6736
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G17250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.6e-12111156454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +h e+Er+RR+++N +f  Lr  +P+       +++Ka+ L  A  YI +L
  OGLUM09G17250.1 111 SHVEAERQRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAAAYIAEL 156
                      89************************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.021107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-15109173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.03E-11110161No hitNo description
PfamPF000101.4E-9110156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-15111170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-10113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDELLSPCSS FSPLSPSSMF STGAAAAAAH AVLEFTSCEV PDEWLMGDVV VAKNEEGVGG  60
GELWPVFAGG SLSPDSELSE LPRSFEAAAA QRPAKRRGRK PGPRPDGPTV SHVEAERQRR  120
EKLNRRFCDL RAAVPTVSRM DKASLLADAA AYIAELRARV ARLESDARQA AAARFEPSSC  180
GGGGGGGGAA PGLDEAVEVR KMGRDAAAVR VTTTGARHAP ARLMGALRSL ELPVQHACVM  240
RVHGATTVQE VLVDVPAALQ DGDALRAALL QRLQDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-18110169766Transcription factor MYC2
5gnj_B2e-18110169766Transcription factor MYC2
5gnj_E2e-18110169766Transcription factor MYC2
5gnj_F2e-18110169766Transcription factor MYC2
5gnj_G2e-18110169766Transcription factor MYC2
5gnj_I2e-18110169766Transcription factor MYC2
5gnj_M2e-18110169766Transcription factor MYC2
5gnj_N2e-18110169766Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0065250.0AP006525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0498F03.
GenBankAP0072540.0AP007254.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa211K08.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876009.11e-168transcription factor MYC2
TrEMBLA0A0E0B5F20.0A0A0E0B5F2_9ORYZ; Uncharacterized protein
STRINGOGLUM09G17250.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.18e-11bHLH family protein