PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G18920.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 194aa MW: 20814.3 Da PI: 10.2297

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G18920.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.8	6.4e-15	113	164	3	54
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +++r++r++kNRe+A rsR+RK+a+i+eLe v+eLe+e +L e ee ++ OGLUM05G18920.1 113 AIQRQKRMIKNRESAARSRERKQAYIAELEAQVAELEEEHAQLLREQEEKNQ 164 789**************************************99977666544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-9	111	176	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.2E-13	112	164	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.841	113	161	IPR004827	Basic-leucine zipper domain
CDD	cd14707	8.17E-17	115	161	No hit	No description
SuperFamily	SSF57959	3.66E-11	116	162	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.3E-13	116	163	No hit	No description
PROSITE pattern	PS00036	0	118	133	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MASSRAAGPP VAEVAARRTA EEVWKEISSS GGLSAPAPAP AAGAAGRGGG PEMTLEDFLA 60 REDDPRATAV EGNMVVGFPN GTEGVGTAGG GRGGGGGGRG RKRTLMDPAD RAAIQRQKRM 120 IKNRESAARS RERKQAYIAE LEAQVAELEE EHAQLLREQE EKNQKRLKEI KEQAVAVVIR 180 KKTQDLRRTN SMEW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	97	GGRGGGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00648	PBM	Transfer from LOC_Os05g36160	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT834109	0.0	CT834109.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA060C07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639395.1	1e-100	bZIP transcription factor 12-like
Swissprot	Q0JHF1	6e-57	BZP12_ORYSJ; bZIP transcription factor 12
TrEMBL	A0A0D9ZZQ8	1e-133	A0A0D9ZZQ8_9ORYZ; Uncharacterized protein
STRING	OGLUM05G18920.1	1e-134	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2665	37	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44080.1	2e-13	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]