PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G06450.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 466aa    MW: 49768.9 Da    PI: 8.8048
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G06450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.31.3e-08184204526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C++f++ G Ck+Gd C FaHg
  OGLUM05G06450.1 184 ACPDFRK-GGCKRGDACEFAHG 204
                      7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0013179205IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.159180206IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4184206IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-7184204IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.258214238IPR000571Zinc finger, CCCH-type
SMARTSM0035612214237IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MVRKRRDTAR VNPTAVSGGG LSGLYSRASS SPPLHHGGSR RRLRTNTLPR RSWRRGEELE  60
SKMMMMGEGA HAPPWQQHVA SPVSGVEGGG GRESEVVAAP YHLLDALRHY LPSNEAAAAE  120
DEEEAAAVAA AVDAYACDEF RMYEFKVRRC ARGRSHDWTE CPFAHPGEKA RRRDPRRYCY  180
SGTACPDFRK GGCKRGDACE FAHGVFECWL HPARYRTQPC KDGTACRRRV CFFAHTPDQL  240
RVLPPSQQQG SNSPRGCGGG GAGAAASPLA ESYDGSPLRR QAFESYLTKS IMSSSPTSTL  300
VSPPRSPPSE SPPLSPDAAG ALRRGAWAGV GSPVNDVLVS LRQLRLGSPR SAPSCASFLP  360
AGYQYGSPKS PAAAAAAALY SLPSTPTRPS PVTVTTASGA TVIVEPLDLG LIEEEQPMER  420
VESGRALREK VFERLSKEAT VSTDAATAAA AAGVAPDVGW VSDLIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1324860.0AC132486.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0473H02, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640763.10.0zinc finger CCCH domain-containing protein 35
SwissprotQ6L4N40.0C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBLA0A0D9ZVC60.0A0A0D9ZVC6_9ORYZ; Uncharacterized protein
STRINGOGLUM05G06450.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.16e-74C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]