PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G00490.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 405aa    MW: 44866.9 Da    PI: 8.3353
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G00490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.001393115323
                      ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                      C+  +Cgk+F +   L++H  +H
  OGLUM05G00490.1  93 CSyeNCGKTFVDVAALRKHAHVH 115
                      77779**************9887 PP
2zf-C2H218.55.4e-06120144123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      y C+   Cgk F ++s LkrH   H
  OGLUM05G00490.1 120 YICQepGCGKKFVDSSKLKRHHLIH 144
                      889999***************9988 PP
3zf-C2H218.94.2e-06150174123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + Cp   Cgk Fs   nL++H++tH
  OGLUM05G00490.1 150 FICPhpGCGKAFSLDFNLRSHLKTH 174
                      789*********************9 PP
4zf-C2H216.52.3e-05180204123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++Cp   Cgk+F++ s Lk+H + H
  OGLUM05G00490.1 180 HVCPfpACGKRFTSDSKLKSHVKGH 204
                      789999***************9988 PP
5zf-C2H218.36.2e-06265290123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      y+Cp   Cgk + +++ L+ H++t H
  OGLUM05G00490.1 265 YVCPydGCGKAYIHSYKLNLHLKTqH 290
                      9**********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.1E-1286115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.40691120IPR007087Zinc finger, C2H2
SMARTSM003550.01691115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093115IPR007087Zinc finger, C2H2
SuperFamilySSF576671.32E-794144No hitNo description
Gene3DG3DSA:3.30.160.606.9E-13117140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.066120149IPR007087Zinc finger, C2H2
SMARTSM003550.0012120144IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280122144IPR007087Zinc finger, C2H2
SuperFamilySSF576679.53E-13131184No hitNo description
Gene3DG3DSA:3.30.160.603.3E-18141175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.822150179IPR007087Zinc finger, C2H2
SMARTSM003550.0011150174IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280152174IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-8178204IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.367180209IPR007087Zinc finger, C2H2
SMARTSM003550.012180204IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280182204IPR007087Zinc finger, C2H2
SuperFamilySSF576671.92E-7183204No hitNo description
SuperFamilySSF576671.92E-7260288No hitNo description
Gene3DG3DSA:3.30.160.604.6E-10261290IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0021265290IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.619265298IPR007087Zinc finger, C2H2
PROSITE patternPS000280267290IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MEYAAPAGAG AGAGAGGYYY YPPSQQHKPR RPPRPAARWV KHWIPQDLAT SSGKCALYKW  60
VREDVYKNLK DGKAVPEPEA VKPEPTTEIL FLCSYENCGK TFVDVAALRK HAHVHNERQY  120
ICQEPGCGKK FVDSSKLKRH HLIHTGQKDF ICPHPGCGKA FSLDFNLRSH LKTHALENYH  180
VCPFPACGKR FTSDSKLKSH VKGHEKTGTP ITAQYVPSSD KPQSSSKPAT PATTKPTTPA  240
ATKTTTPAST KPTTPAPTSF AERPYVCPYD GCGKAYIHSY KLNLHLKTQH PEHGQEENGR  300
IAAHASEHAV NDRANQYNYA EIVDLAPNPK RSKTNSGHKT PSSNKAYNVK ISSVLPADIS  360
GVKNQWPGKY EDDSEETEED QGNNIEDGWR YGNQNADDEE TEYED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-34932068119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1034440.0AK103444.1 Oryza sativa Japonica Group cDNA clone:J033129E14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637702.10.0zinc finger transcription factor YY1
TrEMBLA0A0D9ZT650.0A0A0D9ZT65_9ORYZ; Uncharacterized protein
STRINGOGLUM05G00490.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.14e-91C2H2 family protein