PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM04G20930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 1018aa MW: 107146 Da PI: 6.579 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 112 | 129 | 2 | 19 |
EETTTTEEESSHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrH 19 +C++Cgk F++++++ H OGLUM04G20930.1 112 VCKNCGKEFTSWEHFLEH 129 7**************999 PP | |||||||
2 | zf-C2H2 | 12.2 | 0.00054 | 653 | 674 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C ++F ++ L H+r+H OGLUM04G20930.1 653 TCKLCYRRFGNPRALAGHMRSH 674 6********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.96 | 23 | 45 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.536 | 23 | 45 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.05E-6 | 23 | 45 | No hit | No description |
Pfam | PF13912 | 0.0091 | 24 | 45 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 25 | 45 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.05E-6 | 106 | 130 | No hit | No description |
SMART | SM00355 | 140 | 111 | 131 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.141 | 111 | 138 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.24E-7 | 269 | 292 | No hit | No description |
SMART | SM00355 | 0.13 | 270 | 292 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 6.2E-9 | 270 | 294 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.242 | 270 | 297 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 272 | 292 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.24E-7 | 378 | 405 | No hit | No description |
SMART | SM00355 | 3.7 | 383 | 405 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 9.3E-11 | 383 | 406 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.182 | 383 | 405 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 385 | 405 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.099 | 652 | 674 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.974 | 652 | 675 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.36E-6 | 653 | 674 | No hit | No description |
Pfam | PF13912 | 0.018 | 654 | 674 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 654 | 674 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.36E-6 | 818 | 845 | No hit | No description |
SMART | SM00355 | 0.026 | 823 | 845 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.1E-11 | 823 | 847 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.286 | 823 | 845 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 825 | 845 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 88 | 887 | 907 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.0E-8 | 887 | 908 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1018 aa Download sequence Send to blast |
MQPSPSSPRA PPPTAAQASG YKHFCRVCNK GFTCGSALGG HMRAHGVGDG DGLGADDDDD 60 DDDDSLGDEA VRRARGGADD PWNAGGPSSS GAATHVYELR TNPNRVTRSR QVCKNCGKEF 120 TSWEHFLEHG KCSSGEDDDD EDDVDRSLQP WSPSPEADGE EDPAPASGWL KGKRSRRCKG 180 TGVDLSPTPS ACAAGEEEDL ANCLVMLSSS KVYQAGVTEA EQPSSSSASK EHKRLITFME 240 PTTYVLDTVM ALPPPAPAPQ YVSTVPRGMF ECKACKKVFS SHQALGGHRA SHKKVKGCFA 300 AKLESNAAEV AEPSHHAEVA ERSEDNPGKA TSDARRNVHA SMDGDGNTGT SDAAAELSMA 360 IVPIEPPVAA LAAAPLKKKG KMHECSVCHR LFTSGQALGG HKRCHWLTSS SADHTASVPP 420 LADDLVPLSF RPMLDAPEPA LDLSIAANPP LLASAATVRP KVGGSSFHLD APPPVYIPSS 480 PAIPSQRNKA TATTGSQNAN DAVGLSTAAA EDEADSTTVK RARLSDLKDV SMAGETTPWL 540 QVGIGSSSRG GADDNDKEDF GRVTYPTSSQ GSGKVGDRDQ EQNKDSTKMT EKKKEGEARS 600 NSREIKNKMR LDLDGHNSER SADEMHACWP GTRSPKLCAS SSSIQALAMA KNTCKLCYRR 660 FGNPRALAGH MRSHSVAASR SQISSTSSAS TSVAVGDDDG GGDAKRPIQG YVLREKPKRR 720 VRLAESDFSD RESETEYYSS PPHGKRANTG SGDVEQVSSV SDAATSEEDV ALSLMMLSRD 780 TWPATPPPPP PYRLRGAGYD DGSDGGDAPP APAAAAAQKR TRFQCPACKK VFRSYQALGG 840 HRASHMRGGR GGCCAPPPNP PPSPATPLQP LPECDGGEEE GAKPHPHECP YCFRVFASGQ 900 ALGGHKRSQL CSAAAAAASG DDLPATIKSN GFIDLNLPAP FDDVELSAVS DPFLSSKPAI 960 LVPTVHGTGF GQTIGEIELL STFGGQVVIS MAHVSRPRGT VLFSSLGPPG LHRRVSGH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 375 | 381 | LKKKGKM |
2 | 715 | 721 | KPKRRVR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634601.1 | 0.0 | uncharacterized protein LOC4336604 | ||||
TrEMBL | A0A0D9ZNY5 | 0.0 | A0A0D9ZNY5_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM04G20930.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3524 | 32 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02030.1 | 2e-27 | C2H2-like zinc finger protein |