PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM03G34520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 220aa MW: 23795.9 Da PI: 9.8788 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105 | 4e-33 | 36 | 93 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+ OGLUM03G34520.1 36 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHCHH 93 8******************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.8E-34 | 20 | 94 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.98E-29 | 27 | 94 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.964 | 30 | 95 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.6E-39 | 35 | 94 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-26 | 36 | 93 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MTRPAAAATA TAKKGQKRAR QPRFAFMTKS EIDHLEDGYR WRKYGQKAVK NSPFPRSYYR 60 CTNSKCTVKK RVERSSDDPS VVITTYEGQH CHHTASFQRG VGGAAVAAHI HGAAAVALAE 120 QMSAFVSPPP QPHMLYGLPR LHPPSSSETA VSCSMPTTTS LQELNNGEGL QRPGYNNSPQ 180 AAVTIAQRPP SPSVPPAVSF DKGLLDDIVP PGTYLPTLDI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-26 | 25 | 92 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 1e-26 | 25 | 92 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY341859 | 0.0 | AY341859.1 Oryza sativa (japonica cultivar-group) WRKY19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631421.1 | 1e-135 | probable WRKY transcription factor 57 | ||||
Refseq | XP_015631422.1 | 1e-135 | probable WRKY transcription factor 57 | ||||
TrEMBL | A0A0D9ZDE5 | 1e-162 | A0A0D9ZDE5_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM03G34520.1 | 1e-163 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2125 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 3e-49 | WRKY DNA-binding protein 57 |