PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G19990.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 414aa MW: 46952.1 Da PI: 6.7343

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G19990.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.3	5.7e-20	100	198	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcp 80 +W +v++L+ a+ +++e++ + ++k++W+ vs++m ergf +sp+qC++k+++lnkryk+++e+ +++t ++++++ OGLUM02G19990.1 100 KWISGMVKLLVSAVAYIDEDVDMDYgtgsaarskhamlKRKGKWRLVSAAMTERGFPVSPQQCEDKFNDLNKRYKRMTEILGRGTaCQVVEHPE 193 799**********8888887542334466778888899*****************************************95488887777 PP trihelix 81 yfdql 85 +++ + OGLUM02G19990.1 194 LLEGM 198 76655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.0E-19	98	224	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MEGNLPPRGA LVHGHGHGHG GGVGAFDLEA TMQPPPPFHF AQDPHLHHHQ GMVPVRGNPM 60 LDLGNVVKTS PSDEEDVDDG HHHGGGGGSG KEASQWHRVK WISGMVKLLV SAVAYIDEDV 120 DMDYGTGSAA RSKHAMLKRK GKWRLVSAAM TERGFPVSPQ QCEDKFNDLN KRYKRMTEIL 180 GRGTACQVVE HPELLEGMRL SGKLKEEARK HLNSKHLHYE EMCSYHNRNK MCLLDDPALQ 240 KSLRLALRSG EEHAKKNPFG YDDEDFSDDD DEDEEFDDLE VSAEDHHHGI HGAKRLKHDQ 300 EETHFGSNLS EVAVIDMNKM LSEGSGGPTA EKSPSTPGMR DIRLEKRRLK IKAQMLKIEQ 360 KHFKWLRFSK EKDRELEKMR LENEKMKLEN ERLELELKLK EIEMGIKPKK IFSD

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MEGNLPPRGA LVHGHGHGHG GGVGAFDLEA TMQPPPPFHF AQDPHLHHHQ GMVPVRGNPM  60
LDLGNVVKTS PSDEEDVDDG HHHGGGGGSG KEASQWHRVK WISGMVKLLV SAVAYIDEDV  120
DMDYGTGSAA RSKHAMLKRK GKWRLVSAAM TERGFPVSPQ QCEDKFNDLN KRYKRMTEIL  180
GRGTACQVVE HPELLEGMRL SGKLKEEARK HLNSKHLHYE EMCSYHNRNK MCLLDDPALQ  240
KSLRLALRSG EEHAKKNPFG YDDEDFSDDD DEDEEFDDLE VSAEDHHHGI HGAKRLKHDQ  300
EETHFGSNLS EVAVIDMNKM LSEGSGGPTA EKSPSTPGMR DIRLEKRRLK IKAQMLKIEQ  360
KHFKWLRFSK EKDRELEKMR LENEKMKLEN ERLELELKLK EIEMGIKPKK IFSD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004877	0.0	AP004877.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0472F10.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	0.0	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627648.1	0.0	uncharacterized protein LOC4329598
TrEMBL	A0A0D9YTD0	0.0	A0A0D9YTD0_9ORYZ; Uncharacterized protein
STRING	OGLUM02G19990.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12774	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	7e-63	sequence-specific DNA binding transcription factors