PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM02G11060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 412aa MW: 42070.6 Da PI: 7.826 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.9 | 1.8e-13 | 131 | 181 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++h +Er+RR+++N+ ++ Lr+l+P + k+ + a+i +v+YIk+Lq OGLUM02G11060.1 131 KMSHITVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 181 789*************************9...9********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 9.54E-14 | 127 | 185 | No hit | No description |
PROSITE profile | PS50888 | 15.237 | 129 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-17 | 129 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.8E-13 | 131 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-10 | 131 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-11 | 135 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010374 | Biological Process | stomatal complex development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 412 aa Download sequence Send to blast |
MADGGSGGLC ELFSDDHRDI RHVADADLFR ILETWEECIN GGAGGGGGGV SLAGVADQGA 60 AAASTGAGGG ARTTTTTTAA NGRRREGRDE EKGGGGGGGP PAQKKQKGSS SSSSSPAALA 120 AAVGDGDGAA KMSHITVERN RRKQMNEHLA VLRSLMPCFY VKRGDQASII GGVVDYIKEL 180 QQVLRSLEAK KNRKAYADQV LSPRPSPAAA ALMVKPTPPI SPRFAAGVPI SPRTPTPGSP 240 YNKHAAAAAA AARPPHPAAA TSSCSVAYSM SPAMTPTSSS STTTTTTHEL SPAPAFLPIL 300 DSLVTELAAR GGASCRPLVI PSSAAAIAGI VGVPDVRVEF AGPNLVLKTV SHRAPGQALK 360 IIAALESLSL EILHVSICTV DDATVLSFTI KIGIECELSA EELVQEIQQT FL |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 82 | 106 | RRREGRDEEKGGGGGGGPPAQKKQK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624375.2 | 0.0 | transcription factor SPEECHLESS | ||||
TrEMBL | A0A0D9YQ26 | 0.0 | A0A0D9YQ26_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM02G11060.1 | 0.0 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3484 | 35 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G53210.1 | 1e-41 | bHLH family protein |