PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G38110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 24270.5 Da PI: 9.9084 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66 | 7.6e-21 | 32 | 83 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr ++ +gr++AeIrdp k+ r++lg+++taeeAa+a++aa+++++g+ OGLUM01G38110.1 32 PHYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTYDTAEEAARAYDAAAREFRGA 83 68********.**********83...36*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.6E-14 | 32 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.23E-18 | 32 | 90 | No hit | No description |
SMART | SM00380 | 2.2E-37 | 33 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-23 | 33 | 91 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.368 | 33 | 90 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-32 | 33 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 34 | 45 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MAPRAATVEK VAVAPPTGLG LGVGGGVGAG GPHYRGVRKR PWGRYAAEIR DPAKKSRVWL 60 GTYDTAEEAA RAYDAAAREF RGAKAKTNFP FASQSMVDCG GSPSSNSTVD TGGGGVQTPM 120 RAMPLPPTLD LDLFHRAAAV TAVAGTGVRF PFRGYPVARP ATHPYFFYEQ AAAAAAAAAG 180 YRMMKLAPPV TVAAVAQSDS DSSSVVDLAP SPPAVTANKA AAFDLDLNRP PPVEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 29 | 95 | 1 | 68 | ATERF1 |
3gcc_A | 2e-22 | 29 | 95 | 1 | 68 | ATERF1 |
5wx9_A | 9e-22 | 24 | 90 | 5 | 72 | Ethylene-responsive transcription factor ERF096 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB036883 | 0.0 | AB036883.1 Oryza sativa mRNA for osERF3, complete cds. | |||
GenBank | AB037183 | 0.0 | AB037183.1 Oryza sativa osERF3 mRNA for ethylene responsive element binding factor3, complete cds. | |||
GenBank | AK061380 | 0.0 | AK061380.1 Oryza sativa Japonica Group cDNA clone:006-304-H01, full insert sequence. | |||
GenBank | AP003299 | 0.0 | AP003299.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0699H05. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | KM262835 | 0.0 | KM262835.1 Oryza sativa Indica Group cultivar Nagina 22 Aptella 2-like transcription factor (AP37) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622082.1 | 1e-165 | ethylene-responsive transcription factor 8 | ||||
TrEMBL | A0A0D3EV16 | 1e-165 | A0A0D3EV16_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9YG39 | 1e-165 | A0A0D9YG39_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1NSE1 | 1e-165 | I1NSE1_ORYGL; Uncharacterized protein | ||||
STRING | OGLUM01G38110.1 | 1e-166 | (Oryza glumipatula) | ||||
STRING | ORGLA01G0278100.1 | 1e-166 | (Oryza glaberrima) | ||||
STRING | OBART01G33870.1 | 1e-166 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3846 | 31 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 6e-22 | erf domain protein 9 |