PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART11G04060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Trihelix | ||||||||
Protein Properties | Length: 543aa MW: 61313.8 Da PI: 6.5389 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 84 | 1.9e-26 | 198 | 294 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt+++v++Li+a+++ +e+ +++ +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ ++++++++ ++d OBART11G04060.1 198 KWTDSMVKLLITAVSYAGEDPGADLgggrrnysmmQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGtACNVVENHTLLD 291 7*********************8744455667777**********************************************55*********** PP trihelix 84 qle 86 +++ OBART11G04060.1 292 HMD 294 *97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.9E-20 | 196 | 319 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MWAPRSVGPT CQRETSCSAR PNISAEKEEA EAETAAADCL LAGVQFSRRI PSLYACASSC 60 TPVSILYGTN KKLKCLGDRF GEMEGSNPPG NMSQGPSYGS LDLHGIPKQM HPPNSGNQGF 120 NQPQIPGNFT IPMDRVTEPD NISDRVQLGQ HGKIAHHHHQ HHHRHHSKNR GSDEEEHDMN 180 EDAADGKDMK GSPWHRMKWT DSMVKLLITA VSYAGEDPGA DLGGGRRNYS MMQKKGKWKA 240 ISKVMGERGC HVSPQQCEDK FNDLNKRYKR LTDILGRGTA CNVVENHTLL DHMDISEKMK 300 EDARKILNSK HLFYEEMCSY HNNNRISLPE DPALQQALQL ALRCKEDNDF MRHASGDAEL 360 DDDQSEDSDY EENEEEHRAV DTNIRAPSMH KRMWHVVDHG DVGFVTSCSN DGSGRSDPYD 420 VLDINKPFPD GADLALVQKD LALKAADIQK HRLQIETKAV QLAKQRLKWE MFRKNKDLEL 480 EKLALENEQM MLQNKRFELD LRHKELELEI KIKGNANHPF QMNSIQDRLG GPGMRAIAEM 540 QNG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC120533 | 0.0 | AC120533.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0081F16 map E50055S, complete sequence. | |||
GenBank | AK101154 | 0.0 | AK101154.1 Oryza sativa Japonica Group cDNA clone:J033027D16, full insert sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615140.1 | 0.0 | uncharacterized protein LOC4349866 isoform X1 | ||||
Refseq | XP_015615141.1 | 0.0 | uncharacterized protein LOC4349866 isoform X1 | ||||
TrEMBL | A0A0D3HIK9 | 0.0 | A0A0D3HIK9_9ORYZ; Uncharacterized protein | ||||
STRING | OBART11G04060.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2920 | 38 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 3e-82 | sequence-specific DNA binding transcription factors |