PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G03930.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 502aa    MW: 55933.6 Da    PI: 4.4137
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G03930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS91.81.1e-28962252133
             GRAS   2 velLlecAeavssgdlelaqalLarlsel.....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                       +lLl+ Aeav++gd  la+ + +rl +       + +++++ Rla +f ++L++r+++ ++++y+   p++ +    s ++ ++++ +e+sP+
  OBART11G03930.1  96 SDLLLAGAEAVEAGDSILASVAFSRLDDFlsgipENGAASSFDRLAYHFDQGLRSRMSSASTGCYQ---PEPLP----SGNMLVHQIIQELSPF 182
                      679***********************998554333334479******************9899984...55554....456778899******* PP

             GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa 133
                      +kf+h+t+NqaIl+a+ g+  vH++D++i++G+QW +L+  La
  OBART11G03930.1 183 VKFAHFTTNQAILDAIIGDMDVHVVDLNIGEGIQWSSLMSDLA 225
                      *****************************************98 PP

2GRAS51.61.8e-16246426175359
             GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.......adhnsesFlerfleal 261
                      +f+fn++  +  ++ el+++  + + +++V++    ++    s+s+ +  + +L +vk+l+Pk+vv +e++       ++ +s+sF+e f+eal
  OBART11G03930.1 246 NFHFNTI-PSVHNEDELHAFFEDCKGSVIVSCDTTSMYYK--SLSTLH--SLLLVCVKKLQPKLVVTIEEDlvrigrgVSPSSASFVEFFFEAL 334
                      6888884.55566666777777779999999999777665..555554..79*******************6555443444666********** PP

             GRAS 262 eyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353
                      ++++++f+s+++ +   s     + vE ellg++i++ v + g+ r+e +      +e l   GF + +ls  + +qa++l+  ++ + ++v  
  OBART11G03930.1 335 HHFTTVFESMASCFIGSSyePCLRLVEMELLGPRIQDFVVKYGSVRVEANA-----SEVL--EGFMACELSACNIAQARMLVGLFN-RVFEVVF 420
                      **********77776666578899*********************999888.....5555..5**********************9.6688887 PP

             GRAS 354 esgslv 359
                      ++ sl+
  OBART11G03930.1 421 KKISLL 426
                      766665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098517.88869422IPR005202Transcription factor GRAS
PfamPF035143.7E-2696225IPR005202Transcription factor GRAS
PfamPF035146.2E-14246426IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
METMSYPCSP LLSFPAHEES GYFIWSSQAA LHVDPCSDQQ EDLDLLDTMV LDSNELHQHD  60
APDVDVSINC DDRIFGQESV NLAAIQEELL EEDSLSDLLL AGAEAVEAGD SILASVAFSR  120
LDDFLSGIPE NGAASSFDRL AYHFDQGLRS RMSSASTGCY QPEPLPSGNM LVHQIIQELS  180
PFVKFAHFTT NQAILDAIIG DMDVHVVDLN IGEGIQWSSL MSDLARCGAL MTQLYGCYRS  240
LPTLWNFHFN TIPSVHNEDE LHAFFEDCKG SVIVSCDTTS MYYKSLSTLH SLLLVCVKKL  300
QPKLVVTIEE DLVRIGRGVS PSSASFVEFF FEALHHFTTV FESMASCFIG SSYEPCLRLV  360
EMELLGPRIQ DFVVKYGSVR VEANASEVLE GFMACELSAC NIAQARMLVG LFNRVFEVVF  420
KKISLLMVYY ISLGKNDLRE PNKVIWSSLA AGCGSHGIVV LAFYAADKLL EFKPKGIETY  480
IHPAVERAHF HKEDRMWQEY EN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205340.0AC120534.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0084A20, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617104.10.0nodulation-signaling pathway 2 protein
TrEMBLA0A0D3HIJ00.0A0A0D3HIJ0_9ORYZ; Uncharacterized protein
STRINGOBART11G03930.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76843250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-21GRAS family protein