PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART11G03930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 502aa MW: 55933.6 Da PI: 4.4137 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 91.8 | 1.1e-28 | 96 | 225 | 2 | 133 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 +lLl+ Aeav++gd la+ + +rl + + +++++ Rla +f ++L++r+++ ++++y+ p++ + s ++ ++++ +e+sP+ OBART11G03930.1 96 SDLLLAGAEAVEAGDSILASVAFSRLDDFlsgipENGAASSFDRLAYHFDQGLRSRMSSASTGCYQ---PEPLP----SGNMLVHQIIQELSPF 182 679***********************998554333334479******************9899984...55554....456778899******* PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa 133 +kf+h+t+NqaIl+a+ g+ vH++D++i++G+QW +L+ La OBART11G03930.1 183 VKFAHFTTNQAILDAIIGDMDVHVVDLNIGEGIQWSSLMSDLA 225 *****************************************98 PP | |||||||
2 | GRAS | 51.6 | 1.8e-16 | 246 | 426 | 175 | 359 |
GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.......adhnsesFlerfleal 261 +f+fn++ + ++ el+++ + + +++V++ ++ s+s+ + + +L +vk+l+Pk+vv +e++ ++ +s+sF+e f+eal OBART11G03930.1 246 NFHFNTI-PSVHNEDELHAFFEDCKGSVIVSCDTTSMYYK--SLSTLH--SLLLVCVKKLQPKLVVTIEEDlvrigrgVSPSSASFVEFFFEAL 334 6888884.55566666777777779999999999777665..555554..79*******************6555443444666********** PP GRAS 262 eyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353 ++++++f+s+++ + s + vE ellg++i++ v + g+ r+e + +e l GF + +ls + +qa++l+ ++ + ++v OBART11G03930.1 335 HHFTTVFESMASCFIGSSyePCLRLVEMELLGPRIQDFVVKYGSVRVEANA-----SEVL--EGFMACELSACNIAQARMLVGLFN-RVFEVVF 420 **********77776666578899*********************999888.....5555..5**********************9.6688887 PP GRAS 354 esgslv 359 ++ sl+ OBART11G03930.1 421 KKISLL 426 766665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 17.888 | 69 | 422 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.7E-26 | 96 | 225 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.2E-14 | 246 | 426 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 502 aa Download sequence Send to blast |
METMSYPCSP LLSFPAHEES GYFIWSSQAA LHVDPCSDQQ EDLDLLDTMV LDSNELHQHD 60 APDVDVSINC DDRIFGQESV NLAAIQEELL EEDSLSDLLL AGAEAVEAGD SILASVAFSR 120 LDDFLSGIPE NGAASSFDRL AYHFDQGLRS RMSSASTGCY QPEPLPSGNM LVHQIIQELS 180 PFVKFAHFTT NQAILDAIIG DMDVHVVDLN IGEGIQWSSL MSDLARCGAL MTQLYGCYRS 240 LPTLWNFHFN TIPSVHNEDE LHAFFEDCKG SVIVSCDTTS MYYKSLSTLH SLLLVCVKKL 300 QPKLVVTIEE DLVRIGRGVS PSSASFVEFF FEALHHFTTV FESMASCFIG SSYEPCLRLV 360 EMELLGPRIQ DFVVKYGSVR VEANASEVLE GFMACELSAC NIAQARMLVG LFNRVFEVVF 420 KKISLLMVYY ISLGKNDLRE PNKVIWSSLA AGCGSHGIVV LAFYAADKLL EFKPKGIETY 480 IHPAVERAHF HKEDRMWQEY EN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC120534 | 0.0 | AC120534.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0084A20, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012619 | 0.0 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015617104.1 | 0.0 | nodulation-signaling pathway 2 protein | ||||
TrEMBL | A0A0D3HIJ0 | 0.0 | A0A0D3HIJ0_9ORYZ; Uncharacterized protein | ||||
STRING | OBART11G03930.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7684 | 32 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 3e-21 | GRAS family protein |