PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G01120.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 322aa    MW: 34782.6 Da    PI: 6.7009
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G01120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.62.2e-22123183359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE.EEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv.veitYegeHnhe 59 
                      Dgy+WrKYGqK+++g+ +prsYYrCt +   gC +kk v+r+   + +  ++ Y +eH+++
  OBART11G01120.1 123 DGYQWRKYGQKQIEGAMYPRSYYRCTNStnqGCLAKKTVQRNGGGGAAgYTVAYISEHTCK 183
                      9************************9888889**********98776537899*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.2E-24106184IPR003657WRKY domain
SuperFamilySSF1182902.35E-21114183IPR003657WRKY domain
SMARTSM007742.8E-31121184IPR003657WRKY domain
PfamPF031063.1E-22123183IPR003657WRKY domain
PROSITE profilePS5081119.52123164IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MVGRERELVA ELRHLLFPSP SPTPTTPASH STTALAGDGE CCLPPGLTTT TTVSGGGRRR  60
GRKRVNRDND NVKLLLQADD DQEAVIADHG DANAKPLPNF TKTRRRKQQA TTSTMVTTVP  120
DFDGYQWRKY GQKQIEGAMY PRSYYRCTNS TNQGCLAKKT VQRNGGGGAA GYTVAYISEH  180
TCKSIEPSLP PVILDTTVRT TNNHQQPAAA ESPAATSSSS SNMVMTSSET GNWSGQHGAY  240
ACRQMIAADE EYCCWDTPAT TTTTSGSNGG NSTCAEDIEL LSRPIRSPMH IAAEGNWMDD  300
LLLVTDGLID ISNSSITHFL NF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-141231831069OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102107TRRRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235140.0AC123514.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0004B05, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616434.10.0probable WRKY transcription factor 33
TrEMBLA0A0D3HHH60.0A0A0D3HHH6_9ORYZ; Uncharacterized protein
TrEMBLI1R2M90.0I1R2M9_ORYGL; Uncharacterized protein
STRINGORGLA11G0202100.10.0(Oryza glaberrima)
STRINGOBART11G01120.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57603058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.16e-15WRKY DNA-binding protein 46