PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G01110.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 319aa    MW: 35827 Da    PI: 6.7841
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G01110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY57.82.2e-18145199356
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES-- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeH 56 
                      Dg++WrKYGqK++k+s++prsYYrCt++   +C+++k v++ + d +     Y+g+H
  OBART11G01110.1 145 DGHQWRKYGQKHIKNSKHPRSYYRCTYRqeeKCKATKTVQQRE-DLHHA-NSYNGDH 199
                      9**************************99999********987.43332.2344444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-21138213IPR003657WRKY domain
SuperFamilySSF1182901.83E-18139213IPR003657WRKY domain
SMARTSM007742.8E-30143215IPR003657WRKY domain
PROSITE profilePS5081115.158145185IPR003657WRKY domain
PfamPF031061.3E-22145213IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MKNSSNKRSL VADQWHPSSV CCDHRAALRE IAKGQSLVTQ LRAIVLPALH SDERCDLAAQ  60
MLEGILDFSR KAISQLQLLL SSPHDDDHHH VDDKRRVRKI ISSSDDDDHC SSKAAEDHNA  120
KPLRQHKRRR FGDSVSLETP VPHYDGHQWR KYGQKHIKNS KHPRSYYRCT YRQEEKCKAT  180
KTVQQREDLH HANSYNGDHP IMYTVVYYGQ HTCCKGPAAL ADDHVVVEAS QISTDSHCQS  240
PSSSSDLQAA AVHAGNSSQC SNISVTCSSS VVVEDCNKLL DMMPAADELT ADVLLFDMTA  300
YAPLDLDINW EMDTNALWV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-141452131068OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2891750.0AK289175.1 Oryza sativa Japonica Group cDNA, clone: J100021A14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616436.10.0probable WRKY transcription factor 54
TrEMBLA0A0D3HHH50.0A0A0D3HHH5_9ORYZ; Uncharacterized protein
STRINGOBART11G01110.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-17WRKY DNA-binding protein 70