PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G01100.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 406aa    MW: 45874.2 Da    PI: 6.7849
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G01100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY581.9e-18122186259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST....TEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp....kvveitYegeHnhe 59 
                      +Dg++WrKYGqK +  ++++rsYYrC+ +   gCp++k v++ ++ +    k++++ Y g+H+++
  OBART11G01100.1 122 NDGHQWRKYGQKWISRAKHSRSYYRCANSkvqGCPATKTVQQMDSSGngtsKLFNVDYYGQHTCR 186
                      8*************************9887889********99876522226899*******995 PP
2WRKY581.9e-18248312259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST....TEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp....kvveitYegeHnhe 59 
                      +Dg++WrKYGqK +  ++++rsYYrC+ +   gCp++k v++ ++ +    k++++ Y g+H+++
  OBART11G01100.1 248 NDGHQWRKYGQKWISRAKHSRSYYRCANSkvqGCPATKTVQQMDSSGngtsKLFNVDYYGQHTCR 312
                      8*************************9887889********99876522226899*******995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-21107186IPR003657WRKY domain
PROSITE profilePS5081114.665116163IPR003657WRKY domain
SuperFamilySSF1182902.35E-19117186IPR003657WRKY domain
SMARTSM007741.2E-28121187IPR003657WRKY domain
PfamPF031061.6E-21122186IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-21238312IPR003657WRKY domain
PROSITE profilePS5081114.665242289IPR003657WRKY domain
SuperFamilySSF1182902.35E-19243312IPR003657WRKY domain
SMARTSM007741.2E-28247313IPR003657WRKY domain
PfamPF031061.6E-21248312IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MKILESFGHS DCQVVINMIE HQKALMVELR GMVMPVLPSD NEQAKLALQL LGDILSCSDK  60
AISMLELGGD TKKLTNLVGG KRKGNKHSMD NHNLEEEAKE SVSKRRKNAE HTGSTVAQAP  120
HNDGHQWRKY GQKWISRAKH SRSYYRCANS KVQGCPATKT VQQMDSSGNG TSKLFNVDYY  180
GQHTCRGDGI ADPYVVDIAH HSMEPINQNK CNSPTLEHEA HEVQDERFEN LCMNAEHTGS  240
TVAQAPHNDG HQWRKYGQKW ISRAKHSRSY YRCANSKVQG CPATKTVQQM DSSGNGTSKL  300
FNVDYYGQHT CRGDGIADPY VVDIAHHSME PINQNKCNSP TLEHEAHEVQ DERFENLCMV  360
QNMPEYLIDF ELERAFEFIV NSPLGSEHWT FDDSIRCEHS PICIWG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1020930.0AK102093.1 Oryza sativa Japonica Group cDNA clone:J033083A06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616437.11e-169probable WRKY transcription factor 67
TrEMBLA0A0D3HHH30.0A0A0D3HHH3_9ORYZ; Uncharacterized protein
STRINGOBART11G01100.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133251529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-17WRKY DNA-binding protein 46