PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART07G03740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | YABBY | ||||||||
Protein Properties | Length: 193aa MW: 21388 Da PI: 9.3961 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 156.2 | 2.9e-48 | 1 | 121 | 1 | 134 |
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 ++v+++se+vCyv+Cn+Cntil+v+vP+++++++vtvrCGhCt++ls++la ++q++++++h ++++++++++n+ s+++++++++t OBART07G03740.1 1 MSVQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQDH--------QVQNRGFQGNNFGSYDIASRNQRT 86 57999********************************************************9........99********************** PP YABBY 95 svsseklsenedeevprvppvirPPekrqrvPsaynrfik 134 s++++ +++++++ +p irPPekrqrvPsaynrfi OBART07G03740.1 87 STAMYPMPTSQQQVSP-----IRPPEKRQRVPSAYNRFIN 121 ************9999.....9*****************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.2E-35 | 6 | 121 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MSVQFTSEHV CYVNCNYCNT ILVVNVPNNC SYNIVTVRCG HCTMVLSMDL APFHQARTVQ 60 DHQVQNRGFQ GNNFGSYDIA SRNQRTSTAM YPMPTSQQQV SPIRPPEKRQ RVPSAYNRFI 120 NGLIFPGSIS ASASPTAAAA ATNRGGAACR PATDRRHPRR RAAATGRECA RRRDDDDDDD 180 ILLSRVPLSS PRN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in floral meristem development and maintenance of stamens, rather than in determining polarity in floral organs. {ECO:0000269|PubMed:15604733, ECO:0000269|PubMed:17369428}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274013 | 0.0 | AB274013.1 Oryza sativa Japonica Group OsYABBY1 mRNA for OsYABBY1 protein, complete cds. | |||
GenBank | AF098752 | 0.0 | AF098752.1 Oryza sativa clone FIL1 unknown mRNA. | |||
GenBank | AK070045 | 0.0 | AK070045.1 Oryza sativa Japonica Group cDNA clone:J023038F18, full insert sequence. | |||
GenBank | CT828681 | 0.0 | CT828681.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA230C13, full insert sequence. | |||
GenBank | CT828682 | 0.0 | CT828682.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA240F12, full insert sequence. | |||
GenBank | CT828683 | 0.0 | CT828683.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA249C03, full insert sequence. | |||
GenBank | CT828684 | 0.0 | CT828684.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN084I04, full insert sequence. | |||
GenBank | CT832577 | 0.0 | CT832577.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA333Z37, full insert sequence. | |||
GenBank | FJ750932 | 0.0 | FJ750932.1 Oryza sativa clone KCS005G02 MADS-box transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647414.1 | 1e-85 | protein YABBY 1 isoform X1 | ||||
Swissprot | Q7XIM7 | 8e-87 | YAB1_ORYSJ; Protein YABBY 1 | ||||
TrEMBL | A0A0D3GMH3 | 1e-140 | A0A0D3GMH3_9ORYZ; Uncharacterized protein | ||||
STRING | OBART07G03740.1 | 1e-140 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 1e-28 | YABBY family protein |