PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G21590.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 630aa    MW: 69418.5 Da    PI: 8.7828
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G21590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06103123425
                      ---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                      + C f+a+ G Ck G +C+F H
  OBART05G21590.1 103 RTCTFYAQ-GRCKNGKSCTFLH 123
                      78******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.7E-598124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-699124IPR000571Zinc finger, CCCH-type
SMARTSM003560.004399125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.60599126IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MSIFICVTHT HTHLILTTHH LGFVGVIAAE KKPALQLHGD EKYQKKAGND PVPPTIDDTS  60
KTGGLHLHGG HVSQSPPDSN ALSLQRFGSS SPGGDMKNKT RKRTCTFYAQ GRCKNGKSCT  120
FLHEGEVSGS DNQVYGNHGD TGEGSEIQHP SSSKERQFKN SAGSSQHEIY RTLVHAYGED  180
NRGLTHPVVK HSCHMLKASH GFKIGGSLTA NPTNEVVQLP VVQEKNHEPY FMGHQISLGT  240
NNCLNDMGAY SRLRLDGGKL QFEVAKGDSP RDSHLSRSYL EKNPLKPYYR YQPFDSTISL  300
DPHQYSKKLS AYGGATENLP HKHQEEKSSS HVSHSLNSYT GFRKQGHDSS DFFLVNQSLR  360
ATSHHGTLPL HQLTPDKDAS HHKGADFDKG GTSRSTLLVS SSSQPVVASA GKLSPIKDEV  420
WITSVPFVPS FNFPDFPGST SPSKSQYDPL VDSIDPPKVE SLNNLKTSNI SCSISSQHVD  480
TNVIRGGSLE KPLTFADKLA RNVSAKGSND FGLISYDRGH SSSLDGDNRV KTCERKNDAS  540
LNNEKSDFRF HLVEHVKELV KPIWKEGNLS KEAHKLIVKK SVDKIFASLE PNQMPETEKA  600
ITTYITASAP KIEKLVKVKY LEFVGEWHIF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640223.10.0zinc finger CCCH domain-containing protein 36
SwissprotQ75K810.0C3H36_ORYSJ; Zinc finger CCCH domain-containing protein 36
TrEMBLA0A0D3G9E10.0A0A0D3G9E1_9ORYZ; Uncharacterized protein
STRINGOBART05G21590.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110102123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-12C3H family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]