PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART05G16350.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 467aa MW: 50456.5 Da PI: 10.3833

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART05G16350.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36	1.5e-11	1	52	11	62
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 11 qkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ++NRe+A+ sRqRKk ++eeLeekvk++ + +L ++++ e a+l+++ OBART05G16350.1 1 MRNRESAQLSRQRKKRYVEELEEKVKSMHSVINDLNSRISFVVAENATLRQQ 52 7***************************9999*999888888888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-7	1	55	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.979	1	53	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.0E-9	1	53	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.5E-10	1	53	No hit	No description
CDD	cd14704	4.73E-18	1	47	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.6E-14	1	54	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MRNRESAQLS RQRKKRYVEE LEEKVKSMHS VINDLNSRIS FVVAENATLR QQLSGGSVNC 60 PPPGVYPPAP IPGMHFPWMP GYAMRPPGSH VPLVPIPRLK PQQPVPSSKV VKKPESKKTV 120 ENKSKSKTKT KKVASVSLLG LLLIMLVFGA FIPGFNHNFG MGGQSDNAMF RNFGQSHARV 180 LSVSSQDKSS LNNSDMIGVD VGKMTGNTDG PGKKHQPAHN SSEILPALLY VPRNGKHVKI 240 NGNLIIHSVL ASEKAVAHKA SKDDSDQSAR DHKETSVAIA RYLSLPGKDV NRHETSSADG 300 PLPQWFREGM EGPILNSGMC SEVFQFDIST ASSNPGGIIP ASPVVNSSSV NATEKIPAHS 360 AAYHGKLKNR RVMYNEAIPL TGKTANNTEP FNRTSESSSK LPDSKPASSV VVSVLADPRE 420 AGNGDGDPRV SPKPLSKIFV VVLVDGVRYV TYSCTLPFKS SSPHLVN

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MRNRESAQLS RQRKKRYVEE LEEKVKSMHS VINDLNSRIS FVVAENATLR QQLSGGSVNC  60
PPPGVYPPAP IPGMHFPWMP GYAMRPPGSH VPLVPIPRLK PQQPVPSSKV VKKPESKKTV  120
ENKSKSKTKT KKVASVSLLG LLLIMLVFGA FIPGFNHNFG MGGQSDNAMF RNFGQSHARV  180
LSVSSQDKSS LNNSDMIGVD VGKMTGNTDG PGKKHQPAHN SSEILPALLY VPRNGKHVKI  240
NGNLIIHSVL ASEKAVAHKA SKDDSDQSAR DHKETSVAIA RYLSLPGKDV NRHETSSADG  300
PLPQWFREGM EGPILNSGMC SEVFQFDIST ASSNPGGIIP ASPVVNSSSV NATEKIPAHS  360
AAYHGKLKNR RVMYNEAIPL TGKTANNTEP FNRTSESSSK LPDSKPASSV VVSVLADPRE  420
AGNGDGDPRV SPKPLSKIFV VVLVDGVRYV TYSCTLPFKS SSPHLVN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533, ECO:0000269\|PubMed:22084314}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000269\|PubMed:22084314}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073142	0.0	AK073142.1 Oryza sativa Japonica Group cDNA clone:J033024D10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015640085.1	0.0	bZIP transcription factor 39
Swissprot	Q6AU90	0.0	BZP39_ORYSJ; bZIP transcription factor 39
TrEMBL	I1PVL3	0.0	I1PVL3_ORYGL; Uncharacterized protein
STRING	ORGLA05G0141100.1	0.0	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8228	35	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	2e-78	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]