PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G34090.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 316aa    MW: 34504.9 Da    PI: 4.5468
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G34090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57349.21.4e-15134225298
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                      +f+r+ws eDe+ +L +l   + ++g  +   +da++ ++ +s++ + + +++l  K+  LK++++   kk  +g+    sk hd+  ++lsk+
  OBART02G34090.1 134 AFHRIWSTEDEVRILEALAAHRREHG--SLPQTDALIATLAGSLDNTgYGRKELQGKVSTLKRRYESTAKK--KGDL--PSKGHDRRLYDLSKS 221
                      699******************99999..678899**********8653899******************99..5554..5799*********** PP

           DUF573  95 iWgs 98 
                      +Wgs
  OBART02G34090.1 222 VWGS 225
                      **95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.0E-21135224IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAPKRPTPPP PPPPVASSEE TASGSDSDES EEEEEESPLA QPAPVVSNKG AESDSSGEEE  60
SEEEEEEDLV RSSATKSRDP PQENREEDDS SDEEEDESSE SEKAEAPPPP PLNPTPKQGA  120
EGNGPKVSSP KRQAFHRIWS TEDEVRILEA LAAHRREHGS LPQTDALIAT LAGSLDNTGY  180
GRKELQGKVS TLKRRYESTA KKKGDLPSKG HDRRLYDLSK SVWGSEAAAA AANGTTTAPR  240
EFGEMCKLYP HLAEEVKLLE AAHPGLFKRD FGKLDDDKAH ALDMKIKKQR IAEISVVLRR  300
GDLTKEVTKV LTELVE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0668230.0AK066823.1 Oryza sativa Japonica Group cDNA clone:J013075K03, full insert sequence.
GenBankAP0040580.0AP004058.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1353_F08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627254.11e-141probable tyrosine-protein phosphatase DSP2
TrEMBLA0A0D3FB050.0A0A0D3FB05_9ORYZ; Uncharacterized protein
STRINGOBART02G34090.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67292737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.15e-09DNA-binding storekeeper protein-related transcriptional regulator