PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G26700.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 275aa    MW: 28473.9 Da    PI: 6.6626
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G26700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.0008624321
                     ETTTTEEESSHHHHHHHHH CS
          zf-C2H2  3 CpdCgksFsrksnLkrHir 21
                     C+ C ++F ++  L  H+r
  OBART02G26700.1  6 CKLCYRRFASPRALAGHMR 24
                     ******************9 PP
2zf-C2H211.80.00075132154123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp C+k+F++   L  H  +H
  OBART02G26700.1 132 FQCPACKKVFRSYQALGGHRASH 154
                      89**********99999998887 PP
3zf-C2H211.30.0011196218123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp+C ++F +   L  H ++H
  OBART02G26700.1 196 HECPYCYRVFASGQALGGHKKSH 218
                      79************999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035575424IPR015880Zinc finger, C2H2-like
PfamPF139120.0099624IPR007087Zinc finger, C2H2
PfamPF139126.5E-11131154IPR007087Zinc finger, C2H2
SMARTSM003550.026132154IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286132154IPR007087Zinc finger, C2H2
SuperFamilySSF576671.58E-7132154No hitNo description
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
SuperFamilySSF576671.58E-7191218No hitNo description
SMARTSM003550.39196218IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.912196218IPR007087Zinc finger, C2H2
PfamPF139128.1E-12196218IPR007087Zinc finger, C2H2
PROSITE patternPS000280198218IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAKNACKLCY RRFASPRALA GHMRLRVSEY AFSDRESEAE STPTPAAKGL RAGGGGGGGG  60
DGEPMSSLSY AGTPEEEVAL ALMMLSRDTW PSVERGGGGG EYSDDGSDDG YALPPPSPAP  120
APAPVPEKRT RFQCPACKKV FRSYQALGGH RASHVRGGRG GCCAPPVAPP PQPHPQPPLL  180
EHDAGEEDMD GKAPPHECPY CYRVFASGQA LGGHKKSHVC SAAAAAAHAQ TPGGGAPPPQ  240
PKILGMIDLN FAPPVDEVEL SAVSDPHFPS NPPGP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0646940.0AK064694.1 Oryza sativa Japonica Group cDNA clone:002-116-F05, full insert sequence.
GenBankAP0050720.0AP005072.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0708H12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624884.11e-126zinc finger protein ZAT1
TrEMBLA0A0D3F8G70.0A0A0D3F8G7_9ORYZ; Uncharacterized protein
STRINGOBART02G26700.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.13e-29C2H2-like zinc finger protein