PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G25160.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 270aa    MW: 28522.6 Da    PI: 6.8552
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G25160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.59.9e-2796157159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDg++WrKYGqK++ g+++pr+Y+rCt++   gC++ k+v+r++ dp +++++Y+g+H++ 
  OBART01G25160.1  96 LDDGFSWRKYGQKDILGAKYPRAYFRCTHRhtqGCHASKQVQRADGDPLLFDVVYHGDHTCA 157
                      59***************************98999*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-2883157IPR003657WRKY domain
SuperFamilySSF1182905.36E-2589157IPR003657WRKY domain
PROSITE profilePS5081121.64391154IPR003657WRKY domain
SMARTSM007741.2E-3896158IPR003657WRKY domain
PfamPF031062.2E-2597156IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEGSSSDGSR YGGAGRCALV AELVQMQGMA AAAGRLTQQA GAAPESPPSA DGSAGSDLGA  60
DSRYCANAAG PCKKRKTLPK WSKQVKVRSV QDVGPLDDGF SWRKYGQKDI LGAKYPRAYF  120
RCTHRHTQGC HASKQVQRAD GDPLLFDVVY HGDHTCAHGV RSAAAAIDGQ AAASAEQKHQ  180
PTPPQEQNAV SVAFTSMAVV NASTSSPFVS PATSDCQISY ELGGGSMAGV RNVPDVELAS  240
KTNSSMGDDM EFMFSLDADF LDTYKYSSYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-2293156568OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6769260.0AY676926.1 Oryza sativa (indica cultivar-group) transcription factor WRKY98 (WRKY98) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632319.11e-175probable WRKY transcription factor 53
TrEMBLA0A0D3ES130.0A0A0D3ES13_9ORYZ; Uncharacterized protein
STRINGOBART01G25160.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.13e-41WRKY family protein