PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G08590.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 613aa    MW: 66552.8 Da    PI: 6.9603
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G08590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12459505455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  OBART01G08590.1 459 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 505
                      799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.8E-5056241IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831455504IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.73E-15458509No hitNo description
SuperFamilySSF474591.07E-18458521IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-10459505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-18459518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16461510IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MEADEDGANG GTGGTWTDED RALTASVLGT DAFAYLTKGG GAISEGLVAA SLPVDLQNRL  60
QELVESDRPG AGWNYAIFWQ LSRTKSGDLV LGWGDGSCRE PRDGEMGPAA SAGSDEAKQR  120
MRKRVLQRLH SAFGGVDEED YAPGIDQVTD TEMFFLASMY FAFPRRAGGP GQVFAAGVPL  180
WIPNTERNVF PANYCYRGYL ANAAGFRTIV LVPFETGVLE LGSMQQVAES SDTLQTIRSV  240
FAGAIGNKAG VQRHEGSGPT DKSPGLAKIF GKDLNLGRPS AGPGTGVSKA DERSWEQRTG  300
GGSSLLPNVQ RGLQNFTWSQ ARGLNSHQQK FGNGILIVSN EATPRNNGVV DSSTATQFQL  360
QKAPPLQKLP QLQKSHQLVK PQQLVSQQQL QPQAPRQIDF SAGTSSKPGV LTKKPAGIDG  420
DGAEVDGLCK DEGPPPALED RRPRKRGRKP ANGREEPLNH VEAERQRREK LNQRFYALRA  480
VVPNISKMDK ASLLGDAITY ITDLQKKLKE MEVERERLIE SGMIDPRDRT PRPEVDIQVV  540
QDEVLVRVMS PMESHPVRAI FQAFEEAEVH AGESKITSNN GTAVHSFIIK CPGAEQQTRE  600
KVIAAMSRVM NSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-26453515264Transcription factor MYC2
5gnj_B4e-26453515264Transcription factor MYC2
5gnj_E4e-26453515264Transcription factor MYC2
5gnj_F4e-26453515264Transcription factor MYC2
5gnj_G4e-26453515264Transcription factor MYC2
5gnj_I4e-26453515264Transcription factor MYC2
5gnj_M4e-26453515264Transcription factor MYC2
5gnj_N4e-26453515264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1440448RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621308.10.0transcription factor bHLH13
TrEMBLI1NLN10.0I1NLN1_ORYGL; Uncharacterized protein
STRINGORGLA01G0077100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.37e-72bHLH family protein