PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB12G13780.1
Common NameLOC102711209
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 446aa    MW: 50521 Da    PI: 6.6379
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB12G13780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.89.1e-26122217185
      trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdql 85 
                   +Wt+++v++Li+a+++++e+ ++++          +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++t ++ +++++++d +
  OB12G13780.1 122 KWTDSMVKLLITAVSYTGEDPGADSgsgrrnsaimQKKGKWKAISKVMGERGCSVSPQQCEDKFNDLNKRYKRLTDILGRGTaCKIVENHALLDCM 217
                   7*********************9866788888999**********************************************549999999998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.0E-20120244No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MESNNLPSGN LMQETPYANL DLHPNHAQMH APNPGKQGFD HTQAQAPGNL SMHVNQSTDS  60
DHLPEFQFGE LGKADHHHCH HHHHRQHTKN GMSDDEDHGV NEDATDSQSG KGKKGAAWHR  120
MKWTDSMVKL LITAVSYTGE DPGADSGSGR RNSAIMQKKG KWKAISKVMG ERGCSVSPQQ  180
CEDKFNDLNK RYKRLTDILG RGTACKIVEN HALLDCMSNL SDKMKDDARK ILSSKHLFYE  240
EMCSYHNNNR VSLPEDPALQ RSLQLALRCK DEHDLRRGTS GDADEDDQSV DTDSEEENDE  300
EHYTLQGDKS ALPMHKRLRH MTDQEDVGFG NSSSSHGCSR RSDSHGISLD INKAFPDGTN  360
LALAQKDMAT QSADLEEQRL QIEVQAVYLA KQRLKWERFS KTKDRELERM RLENERMKIE  420
NKRLELDVRR KELELELKLK GSGNLA
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB12G13780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1031220.0AK103122.1 Oryza sativa Japonica Group cDNA clone:J033119K12, full insert sequence.
GenBankAL7139360.0AL713936.4 Oryza sativa chromosome 12, . BAC OJ1057_G11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698803.10.0PREDICTED: uncharacterized protein LOC102711209
RefseqXP_015698804.10.0PREDICTED: uncharacterized protein LOC102711209
TrEMBLJ3NBM00.0J3NBM0_ORYBR; Uncharacterized protein
STRINGOB12G13780.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-88sequence-specific DNA binding transcription factors