PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G15670.1
Common NameLOC102713768
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 331aa    MW: 35011.9 Da    PI: 5.2991
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G15670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.42.9e-1993148256
                   T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                   r+++++t+eq+++Le+ Fe+ +r++  e++ eLA++lg+  rqV vWFqNrRa++k
  OB09G15670.1  93 RTKRRLTAEQVRALERSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWK 148
                   67889**************98**********************************9 PP
2HD-ZIP_I/II116.91.2e-3794184291
   HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                    krrl++eqv++LE+sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkql  d+++L++a+d+l + +++L +++e+Lr+++
  OB09G15670.1  94 TKRRLTAEQVRALERSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLKLDFDRLRAAHDELLAGRDALLADNESLRSQV 184
                   69****************9999******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.61E-1880151IPR009057Homeodomain-like
PROSITE profilePS5007117.92989150IPR001356Homeobox domain
SMARTSM003891.4E-1692154IPR001356Homeobox domain
PfamPF000461.4E-1693148IPR001356Homeobox domain
CDDcd000861.74E-1793151No hitNo description
Gene3DG3DSA:1.10.10.604.6E-1999149IPR009057Homeodomain-like
PRINTSPR000313.7E-6121130IPR000047Helix-turn-helix motif
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PRINTSPR000313.7E-6130146IPR000047Helix-turn-helix motif
PfamPF021831.1E-10150192IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDSGRLAFSS AAAAPCRVAG AGGGQMLLFG GHGGFLGGSP AVAGVEDAER RRKRPFLTTS  60
HKELELQLDL VEELYGVGLD EQGSSSSEAA AARTKRRLTA EQVRALERSF EEEKRKLEPE  120
RKSELARRLG IAPRQVAVWF QNRRARWKTK QLKLDFDRLR AAHDELLAGR DALLADNESL  180
RSQVILLTEK LQANGKSPSP APANQTAVPT THATVRAAGS PHYQLEEGGP YAGSTTTAGG  240
DAMPSPAALL VRGSPESYFA GARSPPSSEE EEDGCGVSDD DPSSSAALLS GAVLVGASGF  300
EHAVAPAPAP ATATVAADDE APLSSWEWFW N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142150RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G15670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8378951e-128CT837895.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA112M06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006661183.10.0PREDICTED: homeobox-leucine zipper protein HOX25-like
SwissprotA3BYC11e-114HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25
TrEMBLJ3MX380.0J3MX38_ORYBR; Uncharacterized protein
STRINGOB09G15670.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127562735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-26homeobox 1