PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB07G10700.1 | ||||||||
Common Name | LOC102713651 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 259aa MW: 27857.2 Da PI: 8.233 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.6 | 5.4e-33 | 107 | 164 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+ OB07G10700.1 107 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHCHH 164 8******************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.8E-34 | 91 | 165 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-28 | 98 | 164 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.735 | 101 | 166 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.6E-39 | 106 | 165 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.2E-26 | 107 | 164 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MAMAGDWPFS ANEAYADSSA IFAELDWANG LAVGELLPPL DPPESETPAG SAASSCSTDD 60 ADGGGKPAAA STEAASKPAP EKKGGKKRRV RQPRFAFMTK SEIDHLEDGY RWRKYGQKAV 120 KNSPFPRSYY RCTNSKCTVK KRVERSSDDP SVVITTYEGQ HCHHTVTFPR AASHIHTMAA 180 ALQMPPFVSA HHQLYSNLPP ASLPSLLQPL HCNQELQAVA SSGYHKPSVT AASSSSPARS 240 VPVDEGLLGD MVPRAMRHG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-26 | 96 | 163 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 3e-26 | 96 | 163 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00067 | PBM | Transfer from AT1G69310 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB07G10700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK240958 | 1e-112 | AK240958.1 Oryza sativa Japonica Group cDNA, clone: J065045F23, full insert sequence. | |||
GenBank | AY341858 | 1e-112 | AY341858.1 Oryza sativa (japonica cultivar-group) WRKY18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006658215.1 | 0.0 | PREDICTED: probable WRKY transcription factor 57 | ||||
Swissprot | Q9C983 | 2e-61 | WRK57_ARATH; Probable WRKY transcription factor 57 | ||||
TrEMBL | J3MI38 | 0.0 | J3MI38_ORYBR; Uncharacterized protein | ||||
STRING | OB07G10700.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2125 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 3e-54 | WRKY DNA-binding protein 57 |
Link Out ? help Back to Top | |
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Entrez Gene | 102713651 |
Publications ? help Back to Top | |||
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