PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB06G21160.1 | ||||||||
Common Name | LOC102722967 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 368aa MW: 41895.5 Da PI: 7.9605 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.7 | 7.2e-07 | 4 | 27 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ff+ G C G+ C F+H+ OB06G21160.1 4 KRVLCKFFMH-GACLKGEYCEFSHD 27 99****8888.*************5 PP | |||||||
2 | zf-CCCH | 28.4 | 2.8e-09 | 35 | 55 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C+yG+rC++ H+ OB06G21160.1 35 VCTFYQK-GACSYGSRCRYDHV 55 5******.*************7 PP | |||||||
3 | zf-CCCH | 23.8 | 7.6e-08 | 151 | 172 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ G C+yG+ C+ +Hg OB06G21160.1 151 PICS-FAAAGNCPYGEECPQMHG 172 6788.*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15663 | 1.0E-7 | 1 | 61 | No hit | No description |
SMART | SM00356 | 1.8E-5 | 2 | 28 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.155 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-7 | 4 | 27 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.9E-4 | 4 | 30 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.558 | 30 | 57 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-4 | 31 | 56 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-5 | 31 | 54 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-4 | 35 | 54 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.333 | 147 | 174 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.4E-4 | 148 | 173 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-5 | 151 | 172 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 1.98E-12 | 206 | 280 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 4.7E-10 | 209 | 275 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 9.63E-4 | 215 | 275 | No hit | No description |
PROSITE profile | PS50089 | 12.297 | 216 | 274 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 2.1E-7 | 216 | 273 | IPR018957 | Zinc finger, C3HC4 RING-type |
SMART | SM00184 | 2.7E-7 | 216 | 273 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 240 | 249 | IPR017907 | Zinc finger, RING-type, conserved site |
SMART | SM00356 | 0.0047 | 303 | 331 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.089 | 303 | 332 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.3E-4 | 305 | 333 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MSSKRVLCKF FMHGACLKGE YCEFSHDWND QPNNVCTFYQ KGACSYGSRC RYDHVKVSRN 60 PTVPPPQSSS TTTRASSSVQ PLSFARPHHV GYQVDSSNPR QQMSMDVLAH SGSKPIWRND 120 FQHESILEDG IDWSSNRIVQ NQTTLSAADL PICSFAAAGN CPYGEECPQM HGDLCTTCGK 180 MCLHPYRPDE REEHIKLCEK NHKRLDSLKR SQEIECSVCL DRVLSKPTAA ERKFGLLSEC 240 DHPFCISCIR NWRNNSPTSG MDVNSALRAC PICRKLSYYV IPSVLWYFSK EEKLEIIENY 300 KVKLKSIDCK YFDFGTGTCP FGSSCFYKHA YRDGRLEEVV LRHLDADDGS TVISKNIRLS 360 DFLSRLRL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 205 | 210 | DSLKRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB06G21160.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK120250 | 0.0 | AK120250.1 Oryza sativa Japonica Group cDNA clone:J013045F22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006656013.1 | 0.0 | PREDICTED: E3 ubiquitin-protein ligase makorin | ||||
Swissprot | Q5ZA07 | 0.0 | C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | J3MDM2 | 0.0 | J3MDM2_ORYBR; Uncharacterized protein | ||||
STRING | OB06G21160.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5326 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-150 | C3H family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 102722967 |
Publications ? help Back to Top | |||
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