PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G10590.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 431aa    MW: 47996.1 Da    PI: 9.2325
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G10590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.31.3e-082152472254
                   SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
      Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   ++yp+  ++  LA+++gL+ +qV++WF N R +
  OB06G10590.1 215 HPYPNDVDKHILARQTGLSRSQVSNWFINARVR 247
                   89*****************************88 PP
2BELL99.23.2e-3269137472
          BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                   +l+++ka++ls++eeVd+rY++y+eq+++v  sFeavag g+a++Yt+lA++a+SrhFrcL+da+++q+
  OB06G10590.1  69 DLERRKARILSMVEEVDRRYRRYREQMRAVEVSFEAVAGGGAAQVYTKLAMRAMSRHFRCLRDALVGQV 137
                   6899**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-521135IPR006563POX domain
PfamPF075262.4E-407133IPR006563POX domain
PROSITE profilePS5007111.353188251IPR001356Homeobox domain
SMARTSM003892.5E-8191255IPR001356Homeobox domain
CDDcd000867.29E-10191252No hitNo description
SuperFamilySSF466898.55E-17192257IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-27194257IPR009057Homeodomain-like
PfamPF059202.5E-17208247IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MQQPFHLRGS KYLGPVKEML AEFCSLEAEV HAMDGAKRAP KIGKWDDVER SSSSSPWGNL  60
SLSSMDLLDL ERRKARILSM VEEVDRRYRR YREQMRAVEV SFEAVAGGGA AQVYTKLAMR  120
AMSRHFRCLR DALVGQVRAL RKVMGDSAGG GAGAAAPGAT KGETPRLRVL DQCLRQQRSF  180
QQSGAIDNFP WRPQRGLPER AVALLRAWLF DHFLHPYPND VDKHILARQT GLSRSQVSNW  240
FINARVRLWK PMIEDMYKEE TKPAEESHHT ANNNNNNKLN PSGGGAGNKQ QHRDDKFYTT  300
ATPSSTVATS LAGESSYHHL RSSANANSSS LISAAASMDD GSRHQLFGHS YSSASGLHGG  360
AVSLTLGLQQ QQPFAAMSMM QQQQSFMVEA AEEEDEEIVL PYRNLMESQL LHDFAAEQIK  420
GKTVWHVLTV L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-15197254158Homeobox protein Meis1
4xrs_B4e-15197254158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G10590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2188950.0AB218895.1 Oryza sativa Japonica Group mRNA for OsBEL protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656551.20.0PREDICTED: homeobox protein BEL1 homolog
TrEMBLJ3MAL50.0J3MAL5_ORYBR; Uncharacterized protein
STRINGOB06G10590.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63983547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.12e-83TALE family protein