PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB05G34350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 189aa MW: 22054.9 Da PI: 10.4113 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 41.1 | 3e-13 | 51 | 102 | 6 | 57 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++t eq ++L e++++n++++ ++++eLA++l+L +qV W NrR + k+ OB05G34350.1 51 RLTMEQCKQLDEFYRQNPTIDVKQKRELAARLNLRLKQVDSWIRNRRSRSKQ 102 6899*********************************************996 PP | |||||||
2 | HD-ZIP_I/II | 66.1 | 7.9e-22 | 48 | 135 | 2 | 89 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 ++ rl+ eq k+L+e ++++ +++ ++K ela +L+l+ +qv+ W nrR R k+k +E+++++Lk++++ +e+n++L+ +ve+L++ OB05G34350.1 48 RHARLTMEQCKQLDEFYRQNPTIDVKQKRELAARLNLRLKQVDSWIRNRRSRSKQKSTEMECKQLKESLNIAQEDNHSLRLQVEQLKT 135 678***************999*****************************************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.4E-12 | 39 | 104 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-12 | 43 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 13.766 | 43 | 103 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-7 | 44 | 107 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.4E-11 | 51 | 102 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.32E-8 | 51 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MNKNAREQGV HLDLNRPYSG EEEELRLGVG MGVHRGEERG VLRRESSRHA RLTMEQCKQL 60 DEFYRQNPTI DVKQKRELAA RLNLRLKQVD SWIRNRRSRS KQKSTEMECK QLKESLNIAQ 120 EDNHSLRLQV EQLKTKNLQL QLQLHTHHWQ HAVRAPAGQQ ASTSAATGIF TSPWLDPNPY 180 RAWYSPNAL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB05G34350.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006655622.1 | 1e-137 | PREDICTED: homeobox-leucine zipper protein HOX3-like | ||||
TrEMBL | J3MA11 | 1e-138 | J3MA11_ORYBR; Uncharacterized protein | ||||
STRING | OB05G34350.1 | 1e-138 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19065 | 8 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 6e-19 | homeobox-leucine zipper protein 17 |