PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB05G34020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 245aa MW: 27057.4 Da PI: 4.9896 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 81 | 1.3e-25 | 70 | 130 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 ldDg +WrKYGqK++ g+++pr+Y+rCt++ gC+++k+v+r++ dp +++++Y geH + OB05G34020.1 70 LDDGLSWRKYGQKDILGAKYPRAYFRCTHRhtqGCNATKQVQRTDGDPLLFDVVYLGEHIC 130 58***************************98999*************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.2E-26 | 57 | 132 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-24 | 63 | 132 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.218 | 65 | 128 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.4E-39 | 70 | 132 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-24 | 71 | 130 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MVELRGERQT LTSELAQVRA MARELEAKMD PDKAAARELC RALSSSVDRK GMAKVRRQVR 60 VTSVQDMVSL DDGLSWRKYG QKDILGAKYP RAYFRCTHRH TQGCNATKQV QRTDGDPLLF 120 DVVYLGEHIC GQAAAAAQRA PPLAGAEPVP MQPQHAGQEQ SSPPAVETEG ITHQVVEDPM 180 APFLFTSTQD VVDGYFSFIS PANSDCQFSS DFSAGSAGVD MDHEARFDDL FLITSEFFQP 240 EIQNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-22 | 69 | 130 | 7 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB05G34020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108389 | 1e-115 | AK108389.1 Oryza sativa Japonica Group cDNA clone:002-142-F03, full insert sequence. | |||
GenBank | HQ858860 | 1e-115 | HQ858860.1 Oryza sativa Japonica Group isolate UT1669 bHLH transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015692948.1 | 1e-145 | PREDICTED: probable WRKY transcription factor 53 | ||||
TrEMBL | J3M9X8 | 0.0 | J3M9X8_ORYBR; Uncharacterized protein | ||||
STRING | OB05G34020.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3355 | 31 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.2 | 3e-30 | WRKY family protein |