PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G20200.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 307aa    MW: 34118.7 Da    PI: 8.4592
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G20200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.11.5e-22170217246
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk 46 
                   dDgy+WrKYGqK++ gs++prsYYrCt++   gC++kkkv+r ++dp 
  OB05G20200.1 170 DDGYTWRKYGQKDILGSRYPRSYYRCTHKnyyGCEAKKKVQRLDDDPF 217
                   8***************************99999***********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.8E-22161218IPR003657WRKY domain
SuperFamilySSF1182903.14E-20166219IPR003657WRKY domain
SMARTSM007741.3E-28169240IPR003657WRKY domain
PfamPF031061.6E-20170218IPR003657WRKY domain
PROSITE profilePS5081118.957170216IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MHAVAPPLSV LLAAAIDRRD RSRERVVVGG GGGETMDEVL AQISEGFRLA GELMSELAAT  60
QNDPAYLAAR XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXA GPAAPGRRRQ EEVRAPRESG EKVRVMVAAQ RTGNTELPPD DGYTWRKYGQ  180
KDILGSRYPR SYYRCTHKNY YGCEAKKKVQ RLDDDPFTYE EKTTVLLASS GSAAEHDHPN  240
EHTGGSSTSG CLQPRGWRLA WCSPAALPFS GETAAKGLWP SACQGQGRES ELWKRGPLVS  300
EVKIGIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-151712391877Disease resistance protein RRS1
5w3x_D3e-151712391877Disease resistance protein RRS1
6ir8_A3e-15170219958OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G20200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2878178e-93AK287817.1 Oryza sativa Japonica Group cDNA, clone: J065181J09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3M5Z61e-164J3M5Z6_ORYBR; Uncharacterized protein
STRINGOB05G20200.11e-165(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.18e-35WRKY DNA-binding protein 55