PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G17240.1
Common NameLOC102709179
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 321aa    MW: 35693.7 Da    PI: 7.3828
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G17240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY61.61.5e-19157219359
                   -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S...SSTTEEEEEEES--SS- CS
          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa...edpkvveitYegeHnhe 59 
                   Dg++WrKYGqK++++s++ rsYYrCt++   +C+++k v++ +   +++ + +++Y g+H+++
  OB05G17240.1 157 DGHQWRKYGQKNINNSKHQRSYYRCTYKheqNCKATKTVQQLDgagTETIMYTVVYYGQHTCK 219
                   9**************************9999*********9873225677899********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.8E-22146219IPR003657WRKY domain
SuperFamilySSF1182908.76E-21150219IPR003657WRKY domain
SMARTSM007747.9E-32155220IPR003657WRKY domain
PfamPF031066.6E-23157219IPR003657WRKY domain
PROSITE profilePS5081114.148157221IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MKNKISSRYP LLAHSSLRGS TAAGDGDGDA KCFRCDHRPA IDEIVREQSL VTQLRAVVLP  60
ALETKADERA ELVAQLFGSI LDCSRKVISA LRSHYVVGES PPPEAADVVD KRRAKRKNSE  120
HSKKGDDDQA KAKSHEQKRS RRYTNSTSQV TPVPHYDGHQ WRKYGQKNIN NSKHQRSYYR  180
CTYKHEQNCK ATKTVQQLDG AGTETIMYTV VYYGQHTCKT NLSSSNASPH VVETSTPQSI  240
SSACSDPGDY YSHKLESMHT PELAEVCSEL GSSCHALEVG HSALGLEDED MHKQLIETFA  300
CGSLDLDSWE IDAIVRSGFF C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-141572191069OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G17240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692985.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLJ3M5500.0J3M550_ORYBR; Uncharacterized protein
STRINGOB05G17240.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.15e-20WRKY DNA-binding protein 70