PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G30700.1
Common NameLOC102703958
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 492aa    MW: 50959.9 Da    PI: 5.1913
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G30700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68.3e-31243301259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  OB04G30700.1 243 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 301
                   699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.109237303IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-30240303IPR003657WRKY domain
SuperFamilySSF1182903.53E-26240303IPR003657WRKY domain
SMARTSM007741.4E-37242302IPR003657WRKY domain
PfamPF031061.1E-25244301IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MCDYFLQRME GDQAGGDLTD NGRAGGGAMP GSVVVDLPST AAEWQLPAEP MLFPPPPSLS  60
SDGCGGGAQA ANIFGGGDPF AGLADPFSSD YSSGADFLDA MPDAMAKVGF DTVVGAGAGG  120
GGGGGGGGGN CGQLLDMSRK PLLPRGMPMP AVGALAPPRV MPSPLSPRAI RPYPAISAGD  180
MMKLGITAGQ AAGCAIDAAV AGMQMSSPRS GGIKRRKNQA RKVVCIPAPT AAGGRPSGEV  240
VPSDLWAWRK YGQKPIKGSP YPRGYYRCSS SKGCSARKQV ERSRTDPNML VITYTSEHNH  300
PWPTQRNALA GSTRSHHSKN SGGGGGGGSG SKSSQNEKSQ QANVKEEQKD QAATTATSTI  360
TTTNSASPVV VKEEETLAGS SSEALELERV MDTAAGVVDH SELMDHVFSE SYKPMIPETG  420
QPDDFFADLA ELESDPMSLI FSKEYMEAKP PGGGDHAQEK AMAKDLDPFD MIDWSTTANS  480
SVGSSFEQGK RG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-25217304280Disease resistance protein RRS1
5w3x_D3e-25217304280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G30700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1109120.0AK110912.1 Oryza sativa Japonica Group cDNA clone:002-173-C03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652742.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9SA803e-70WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLJ3M0Z50.0J3M0Z5_ORYBR; Uncharacterized protein
STRINGOB04G30700.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-68WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]