PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G28030.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 491aa    MW: 51636.2 Da    PI: 6.3234
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G28030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55.1e-055976219
                  EETTTTEEESSHHHHHHH CS
       zf-C2H2  2 kCpdCgksFsrksnLkrH 19
                  +C++Cgk F++++++  H
  OB04G28030.1 59 VCKNCGKEFTSWEHFLEH 76
                  7**************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.7235885IPR007087Zinc finger, C2H2
SMARTSM003551405878IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.66E-8212235No hitNo description
PfamPF139122.7E-9213237IPR007087Zinc finger, C2H2
SMARTSM003550.13213235IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.242213240IPR007087Zinc finger, C2H2
PROSITE patternPS000280215235IPR007087Zinc finger, C2H2
SuperFamilySSF576676.66E-8309336No hitNo description
PfamPF139124.0E-11314337IPR007087Zinc finger, C2H2
SMARTSM003553.7314336IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182314336IPR007087Zinc finger, C2H2
PROSITE patternPS000280316336IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MRAHGVGDGD GLGVDDDGDD DDSLGDDRWN SGVPSSSAGA THVYALRTKP NRLTRSRQVC  60
KNCGKEFTSW EHFLEHGKCN SGEDEDDEEP DRSLQSWSPE AKGEENPGPS TGWSKGKRSR  120
RAKSVGIDSS PPASACMAGE EEDLANCLVL LSSSKLPQPG ISQAQPEPES SVSGSKEYNT  180
PMSCMEPAFN TVMMLLPSPT SVQYVSPTAR GMFECKACKK VFSSHQALGG HRASHKKVKG  240
CFAARLDSNI TEPPQHSGVA HANTNATFDA SNTDGDANAG TSEAAAELSM AIVPRDPPVA  300
ALAAAPLKKK GKMHECSVCH RLFTSGQALG GHKRCHWLTS NSADHASSIA NLPPLPPADD  360
LIGASCHPLH FRPMMNAPEP ALNLGIAANP SPLASRSKVG GSSLHPDATP PVASPTTVPH  420
RDKATAITGS QNAKDAVGLS VVAEDEADST TVKRARLRDL KDVSMAGETT PWLQVGIGSS  480
SRGSGDDNDR Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1306312LKKKGKM
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G28030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126129e-66CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691535.10.0PREDICTED: uncharacterized protein LOC102714091, partial
TrEMBLJ3M0780.0J3M078_ORYBR; Uncharacterized protein
STRINGOB04G28030.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.17e-23C2H2-like zinc finger protein