PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB04G28030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 491aa MW: 51636.2 Da PI: 6.3234 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.5 | 5.1e-05 | 59 | 76 | 2 | 19 |
EETTTTEEESSHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrH 19 +C++Cgk F++++++ H OB04G28030.1 59 VCKNCGKEFTSWEHFLEH 76 7**************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.723 | 58 | 85 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 140 | 58 | 78 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 6.66E-8 | 212 | 235 | No hit | No description |
Pfam | PF13912 | 2.7E-9 | 213 | 237 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 213 | 235 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.242 | 213 | 240 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 215 | 235 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.66E-8 | 309 | 336 | No hit | No description |
Pfam | PF13912 | 4.0E-11 | 314 | 337 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.7 | 314 | 336 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.182 | 314 | 336 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 316 | 336 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MRAHGVGDGD GLGVDDDGDD DDSLGDDRWN SGVPSSSAGA THVYALRTKP NRLTRSRQVC 60 KNCGKEFTSW EHFLEHGKCN SGEDEDDEEP DRSLQSWSPE AKGEENPGPS TGWSKGKRSR 120 RAKSVGIDSS PPASACMAGE EEDLANCLVL LSSSKLPQPG ISQAQPEPES SVSGSKEYNT 180 PMSCMEPAFN TVMMLLPSPT SVQYVSPTAR GMFECKACKK VFSSHQALGG HRASHKKVKG 240 CFAARLDSNI TEPPQHSGVA HANTNATFDA SNTDGDANAG TSEAAAELSM AIVPRDPPVA 300 ALAAAPLKKK GKMHECSVCH RLFTSGQALG GHKRCHWLTS NSADHASSIA NLPPLPPADD 360 LIGASCHPLH FRPMMNAPEP ALNLGIAANP SPLASRSKVG GSSLHPDATP PVASPTTVPH 420 RDKATAITGS QNAKDAVGLS VVAEDEADST TVKRARLRDL KDVSMAGETT PWLQVGIGSS 480 SRGSGDDNDR Q |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 306 | 312 | LKKKGKM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB04G28030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012612 | 9e-66 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015691535.1 | 0.0 | PREDICTED: uncharacterized protein LOC102714091, partial | ||||
TrEMBL | J3M078 | 0.0 | J3M078_ORYBR; Uncharacterized protein | ||||
STRING | OB04G28030.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3524 | 32 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 7e-23 | C2H2-like zinc finger protein |